SMTL ID : 6c23.1

Cryo-EM structure of PRC2 bound to cofactors AEBP2 and JARID2 in the Compact Active State

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY 3.90 Å

Oligo State

hetero-3-1-2-1-1-1-1-1-mer

Ligands

1 x ALA- ALA- ALA- ARG- LYS- PHE- ALA: JARID2-substrate(Non-covalent)

ALA-ALA-ALA-ARG-LYS-PHE-ALA.1: 16 residues within 4Å: Chain C: Y.641, Q.648, A.651, D.652, G.655, D.659, S.664, L.666, F.667, N.668, A.697, K.698, F.724, Y.726, R.727, Y.728 19 PLIP interactions: 19 interactions with chain C Hydrophobic interactions: C:N.668, C:A.697, C:F.724, C:Y.726, C:Y.726, C:R.727 Hydrogen bonds: C:Y.641, C:Q.648, C:Q.648, C:D.652, C:D.659, C:S.664, C:L.666, C:N.668, C:Y.726, C:Y.726, C:R.727, C:Y.728 Salt bridges: C:D.652

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kasinath, V. et al., Structures of human PRC2 with its cofactors AEBP2 and JARID2. Science (2018)

Release Date

2018-01-24

Peptides

Polycomb protein SUZ12: AEH
Protein Jumonji: B
Histone-lysine N-methyltransferase EZH2: CJ
Polycomb protein EED: D
Histone-binding protein RBBP4: F
Zinc finger protein AEBP2: G
SUZ12: I
Protein Jumonji: K

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

E
M

H
Q

B
E

C
K

J
C

D
L

F
N

G
P

I
Z

K
B

Polycomb protein SUZ12

Protein Jumonji

Histone-lysine N-methyltransferase EZH2

Polycomb protein EED

Histone-binding protein RBBP4

Zinc finger protein AEBP2

SUZ12

Protein Jumonji

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