SMTL ID : 6c24.1

Cryo-EM structure of PRC2 bound to cofactors AEBP2 and JARID2 in the Extended Active State

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY 3.50 Å

Oligo State

hetero-3-2-2-1-1-1-1-mer

Ligands

1 x ALA- ALA- ALA- ARG- LYS- PHE- ALA: JARID2-substrate(Non-covalent)

ALA-ALA-ALA-ARG-LYS-PHE-ALA.1: 14 residues within 4Å: Chain D: Y.641, Q.648, A.651, D.652, G.655, S.664, L.666, F.667, N.668, A.697, F.724, Y.726, R.727, Y.728 12 PLIP interactions: 12 interactions with chain D Hydrophobic interactions: D:Y.728 Hydrogen bonds: D:Y.641, D:Q.648, D:Q.648, D:D.652, D:S.664, D:L.666, D:N.668, D:Y.726, D:R.727, D:Y.728 Salt bridges: D:D.652

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kasinath, V. et al., Structures of human PRC2 with its cofactors AEBP2 and JARID2. Science (2018)

Release Date

2018-01-24

Peptides

Polycomb protein SUZ12: AFI
Protein Jumonji: BC
Histone-lysine N-methyltransferase EZH2: DK
Polycomb protein EED: E
Histone-binding protein RBBP4: G
Zinc finger protein AEBP2: H
SUZ12: J

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

F
M

I
Q

B
B

C
E

D
K

K
C

E
L

G
N

H
P

J
Z

Polycomb protein SUZ12

Protein Jumonji

Histone-lysine N-methyltransferase EZH2

Polycomb protein EED

Histone-binding protein RBBP4

Zinc finger protein AEBP2

SUZ12

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