SMTL ID : 6cd8.2 (1 other biounit)

Complex of GID4 fragment with short peptide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

monomer

Ligands

1 x PRO- SER- ARG- VAL: Tetrapeptide PSRV(Non-covalent)

PRO-SER-ARG-VAL.1: 13 residues within 4Å: Chain A: Q.10, Y.17, L.37, I.39, L.42, E.115, G.129, A.130, S.131, Y.136, Y.151, S.156, Q.160 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:I.39, A:L.42, A:L.42 Hydrogen bonds: A:Q.10, A:G.129, A:G.129, A:S.131, A:S.131, A:Y.136, A:S.156, A:S.156, A:Q.160 Water bridges: A:E.157

8 x UNX: UNKNOWN ATOM OR ION(Non-functional Binders)

UNX.2: 3 residues within 4Å: Chain A: T.28, I.57, K.104 No protein-ligand interaction detected (PLIP) UNX.3: 2 residues within 4Å: Chain A: E.157, W.158 No protein-ligand interaction detected (PLIP) UNX.4: 3 residues within 4Å: Chain A: S.59, K.60, Y.100 No protein-ligand interaction detected (PLIP) UNX.5: 4 residues within 4Å: Chain A: K.125, S.131, F.132, A.133 No protein-ligand interaction detected (PLIP) UNX.6: 4 residues within 4Å: Chain A: D.121, H.122, T.123, I.124 No protein-ligand interaction detected (PLIP) UNX.7: 4 residues within 4Å: Chain A: L.103, G.106, D.107, Y.108 No protein-ligand interaction detected (PLIP) UNX.8: 4 residues within 4Å: Chain A: L.49, T.50, V.119 Ligands: UNX.9 No protein-ligand interaction detected (PLIP) UNX.9: 6 residues within 4Å: Chain A: Y.46, L.118, V.119, P.120, D.121 Ligands: UNX.8 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dong, C. et al., Molecular basis of GID4-mediated recognition of degrons for the Pro/N-end rule pathway. Nat. Chem. Biol. (2018)

Release Date

2018-03-07

Peptides

Glucose-induced degradation protein 4 homolog: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Glucose-induced degradation protein 4 homolog

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