SMTL ID : 6wzx.2 (1 other biounit)

GID4 in complex with IGLWKS peptide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.75 Å

Oligo State

monomer

Ligands

1 x ILE- GLY- LEU- TRP- LYS- SER: ILE-GLY-LEU-TRP-LYS peptide(Non-covalent)

ILE-GLY-LEU-TRP-LYS-SER.1: 23 residues within 4Å: Chain A: Q.10, S.12, K.13, Y.17, L.37, I.39, L.42, T.43, T.51, E.115, I.127, S.128, G.129, A.130, S.131, F.132, Y.136, Y.151, R.154, S.155, S.156, E.157, Q.160 17 PLIP interactions: 17 interactions with chain A Hydrophobic interactions: A:K.13, A:L.42, A:L.42 Hydrogen bonds: A:Q.10, A:K.13, A:G.129, A:A.130, A:S.131, A:S.131, A:Y.136, A:Y.136, A:S.155, A:S.155, A:S.156, A:E.157, A:Q.160, A:Q.160

7 x UNX: UNKNOWN ATOM OR ION(Non-functional Binders)

UNX.2: 1 residues within 4Å: Chain A: G.29 No protein-ligand interaction detected (PLIP) UNX.3: 3 residues within 4Å: Chain A: Y.17, D.18, K.40 No protein-ligand interaction detected (PLIP) UNX.4: 3 residues within 4Å: Chain A: P.63, L.65, R.67 No protein-ligand interaction detected (PLIP) UNX.5: 6 residues within 4Å: Chain A: W.69, D.70, G.134, F.135, Y.152, H.153 No protein-ligand interaction detected (PLIP) UNX.6: 5 residues within 4Å: Chain A: G.81, F.83, L.84, F.86, Y.87 No protein-ligand interaction detected (PLIP) UNX.7: 2 residues within 4Å: Chain A: D.70, R.154 No protein-ligand interaction detected (PLIP) UNX.8: 5 residues within 4Å: Chain A: N.30, S.31, Y.32, K.61, H.62 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dong, C. et al., Recognition of nonproline N-terminal residues by the Pro/N-degron pathway. Proc.Natl.Acad.Sci.USA (2020)

Release Date

2020-06-17

Peptides

Glucose-induced degradation protein 4 homolog: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Glucose-induced degradation protein 4 homolog

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