SMTL ID : 7u3i.2 (1 other biounit)

GID4 in complex with compound 16

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.99 Å

Oligo State

monomer

Ligands

1 x L5X: 3-{[(5S)-5-methyl-4,5-dihydro-1,3-thiazol-2-yl]amino}phenol(Non-covalent)

L5X.1: 12 residues within 4Å: Chain A: Q.10, S.12, L.37, I.39, L.49, T.51, E.115, S.131, F.132, Y.136, Y.151, Q.160 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:Q.10, A:L.37, A:I.39, A:L.49, A:T.51 Hydrogen bonds: A:E.115, A:S.131 pi-Stacking: A:Y.151

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 4 residues within 4Å: Chain A: R.77, K.78, G.81, Y.87 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Y.87, A:Y.87 Water bridges: A:G.81

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chana, C.K. et al., Discovery and Structural Characterization of Small Molecule Binders of the Human CTLH E3 Ligase Subunit GID4. J.Med.Chem. (2022)

Release Date

2022-10-05

Peptides

Glucose-induced degradation protein 4 homolog: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Glucose-induced degradation protein 4 homolog

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