SMTL ID : 7u3k.1

GID4 in complex with compound 89

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

monomer

Ligands

1 x L73: N-butylglycyl-4-tert-butyl-D-phenylalanyl-3-methoxy-N-methyl-L-phenylalaninamide(Non-covalent)

L73.1: 14 residues within 4Å: Chain A: Q.10, S.12, K.13, L.49, T.51, E.115, L.118, S.131, F.132, Y.136, Y.151, H.153, S.156, Q.160 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:S.12, A:K.13, A:L.49, A:T.51, A:L.118 Hydrogen bonds: A:Q.10, A:E.115, A:S.131, A:Y.136, A:Y.151, A:S.156, A:S.156, A:Q.160, A:Q.160

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 2 residues within 4Å: Chain A: K.125, I.127 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:I.127 GOL.3: 2 residues within 4Å: Chain A: D.72, D.74 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chana, C.K. et al., Discovery and Structural Characterization of Small Molecule Binders of the Human CTLH E3 Ligase Subunit GID4. J.Med.Chem. (2022)

Release Date

2022-10-05

Peptides

Glucose-induced degradation protein 4 homolog: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Glucose-induced degradation protein 4 homolog

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