SMTL ID : 6ces.1

Cryo-EM structure of GATOR1-RAG

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-1-mer

Ligands

1 x GNP: PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER(Non-covalent)

GNP.1: 19 residues within 4Å: Chain D: S.16, G.17, S.18, G.19, K.20, T.21, S.22, T.36, R.37, G.40, A.41, T.42, Q.66, H.127, K.128, D.130, S.163, I.164, W.165 19 PLIP interactions: 19 interactions with chain D Hydrogen bonds: D:S.16, D:S.16, D:G.17, D:G.19, D:K.20, D:T.21, D:S.22, D:T.36, D:G.40, D:T.42, D:T.42, D:G.65, D:Q.66, D:I.164, D:W.165, D:W.165 Salt bridges: D:D.130 pi-Cation interactions: D:K.128, D:K.128

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Shen, K. et al., Architecture of the human GATOR1 and GATOR1-Rag GTPases complexes. Nature (2018)

Release Date

2018-03-28

Peptides

GATOR complex protein NPRL2: A
GATOR complex protein NPRL3: B
GATOR complex protein DEPDC5: C
Ras-related GTP-binding protein A: D
Ras-related GTP-binding protein C: E

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
N

B
M

C
D

D
A

E
C

GATOR complex protein NPRL2

GATOR complex protein NPRL3

GATOR complex protein DEPDC5

Ras-related GTP-binding protein A

Ras-related GTP-binding protein C

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