SMTL ID : 9ed6.1

CryoEM map of the mLST8-Rag-Ragultor subcomplex

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-1-1-1-1-mer

Ligands

1 x GTP: GUANOSINE-5'-TRIPHOSPHATE(Covalent)

GTP.1: 22 residues within 4Å: Chain A: S.16, G.17, S.18, G.19, K.20, T.21, S.22, T.36, R.37, G.40, A.41, T.42, C.63, G.64, H.127, K.128, D.130, L.131, S.163, I.164, W.165 Ligands: MG.2 14 PLIP interactions: 14 interactions with chain A Hydrogen bonds: A:K.20, A:T.21, A:T.21, A:S.22, A:T.36, A:T.42, A:C.63, A:I.164, A:W.165, A:W.165 Salt bridges: A:K.20, A:K.20, A:D.130 pi-Cation interactions: A:K.128

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 3 residues within 4Å: Chain A: K.20, T.21 Ligands: GTP.1 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:T.21

1 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)

GDP.3: 15 residues within 4Å: Chain F: L.69, R.70, R.71, S.72, G.73, K.74, N.75, S.76, Q.147, H.178, K.179, D.181, S.219, I.220, Y.221 18 PLIP interactions: 18 interactions with chain F Hydrogen bonds: F:R.71, F:R.71, F:S.72, F:G.73, F:K.74, F:N.75, F:S.76, F:S.76, F:Q.147, F:Q.147, F:K.179, F:K.179, F:I.220, F:Y.221 Salt bridges: F:R.71, F:K.74, F:D.181 pi-Stacking: F:Y.221

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cui, Z. et al., Structural basis for growth factor and nutrient signal integration on the lysosomal membrane by mTORC1. To Be Published

Release Date

2025-09-10

Peptides

Ras-related GTP-binding protein A: A
Ragulator complex protein LAMTOR2: B
Ragulator complex protein LAMTOR3: C
Ragulator complex protein LAMTOR5: D
Target of rapamycin complex subunit LST8: E
Ras-related GTP-binding protein C: F
Ragulator complex protein LAMTOR1: G
Ragulator complex protein LAMTOR4: H

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
E

C
F

D
H

E
I

F
C

G
D

H
G

Ras-related GTP-binding protein A

Ragulator complex protein LAMTOR2

Ragulator complex protein LAMTOR3

Ragulator complex protein LAMTOR5

Target of rapamycin complex subunit LST8

Ras-related GTP-binding protein C

Ragulator complex protein LAMTOR1

Ragulator complex protein LAMTOR4

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