SMTL ID : 6dai.1

Discovery of Potent 2-Aryl-6,7-Dihydro-5HPyrrolo[ 1,2-a]imidazoles as WDR5 WIN-site Inhibitors Using Fragment-Based Methods and Structure-Based Design

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.63 Å

Oligo State

monomer

Ligands

2 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.1: 5 residues within 4Å: Chain A: F.112, K.238, Y.239, C.240 Ligands: G2V.3 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:C.240 DMS.2: 3 residues within 4Å: Chain A: W.38, E.59, V.95 No protein-ligand interaction detected (PLIP)

2 x G2V: 6-(6,7-dihydro-5H-pyrrolo[1,2-a]imidazol-2-yl)-1-methylindoline(Non-covalent)

G2V.3: 12 residues within 4Å: Chain A: S.28, S.70, D.71, F.112, C.113, S.154, F.198, Y.239, C.240, F.242, I.284 Ligands: DMS.1 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:F.112, A:F.112, A:F.198, A:Y.239, A:I.284, A:I.284 pi-Stacking: A:F.112, A:F.242 G2V.4: 8 residues within 4Å: Chain A: D.86, Y.110, F.112, F.128, P.152, V.153, S.154, Y.170 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:F.112 pi-Stacking: A:Y.110, A:Y.110, A:F.128, A:Y.170

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, F. et al., Discovery of Potent 2-Aryl-6,7-dihydro-5 H-pyrrolo[1,2- a]imidazoles as WDR5-WIN-Site Inhibitors Using Fragment-Based Methods and Structure-Based Design. J. Med. Chem. (2018)

Release Date

2018-09-05

Peptides

WD repeat-containing protein 5: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

WD repeat-containing protein 5

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