SMTL ID : 6dak.1

Discovery of Potent 2-Aryl-6,7-Dihydro-5HPyrrolo[ 1,2-a]imidazoles as WDR5 WIN-site Inhibitors Using Fragment-Based Methods and Structure-Based Design

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

monomer

Ligands

1 x G1Y: N-{[3-(6,7-dihydro-5H-pyrrolo[1,2-a]imidazol-2-yl)phenyl]methyl}benzamide(Non-covalent)

G1Y.1: 16 residues within 4Å: Chain A: S.28, S.70, D.71, F.112, C.113, F.128, S.154, A.155, Y.170, S.197, F.198, K.238, Y.239, C.240, F.242, I.284 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:F.112, A:F.128, A:A.155, A:F.198, A:F.242, A:F.242, A:I.284 Hydrogen bonds: A:C.240 pi-Stacking: A:F.112, A:F.242

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.2: 4 residues within 4Å: Chain A: W.38, I.50, E.59, V.95 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, F. et al., Discovery of Potent 2-Aryl-6,7-dihydro-5 H-pyrrolo[1,2- a]imidazoles as WDR5-WIN-Site Inhibitors Using Fragment-Based Methods and Structure-Based Design. J. Med. Chem. (2018)

Release Date

2018-09-05

Peptides

WD repeat-containing protein 5: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

WD repeat-containing protein 5

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