SMTL ID : 6dbc.1

Second bromodomain of Human BRD2 with a Tetrahydroquinoline analogue

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.05 Å

Oligo State

monomer

Ligands

7 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 3 residues within 4Å: Chain A: L.10, N.14, M.63 2 PLIP interactions: 2 interactions with chain A Water bridges: A:K.11, A:K.11 EDO.2: 7 residues within 4Å: Chain A: I.49, I.50, K.51, H.52, L.80, N.84, K.87 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:K.51, A:H.52, A:H.52, A:N.84, A:K.87, A:K.87 EDO.3: 3 residues within 4Å: Chain A: Y.28, M.98, K.101 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.101 EDO.4: 4 residues within 4Å: Chain A: Q.103, D.104, E.107, F.108 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.104 EDO.5: 3 residues within 4Å: Chain A: H.93, D.94 Ligands: G3J.8 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.94 Water bridges: A:D.92, A:D.94 EDO.6: 2 residues within 4Å: Chain A: L.21, Y.33 1 PLIP interactions: 1 interactions with chain A Water bridges: A:L.21 EDO.7: 3 residues within 4Å: Chain A: W.30, L.41 Ligands: G3J.8 No protein-ligand interaction detected (PLIP)

1 x G3J: 1-[(2S,4R)-4-[(2-chlorophenyl)amino]-2-methyl-6-(1H-pyrazol-3-yl)-3,4-dihydroquinolin-1(2H)-yl]ethan-1-one(Non-covalent)

G3J.8: 13 residues within 4Å: Chain A: W.30, P.31, F.32, V.36, L.41, L.43, C.85, N.89, H.93, V.95, M.98 Ligands: EDO.5, EDO.7 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:W.30, A:W.30, A:F.32, A:V.36, A:L.43, A:V.95, A:V.95 Hydrogen bonds: A:N.89 Water bridges: A:H.93 pi-Stacking: A:W.30

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

White, S.W. et al., Second bromodomain of Human BRD2 with a Tetrahydroquinoline analogue. To Be Published

Release Date

2019-11-13

Peptides

Bromodomain-containing protein 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Bromodomain-containing protein 2

Related Entries With Identical Sequence