SMTL ID : 6e1a.1

Menin bound to M-89

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.10 Å

Oligo State

monomer

Ligands

1 x HL7: (1S,2R)-2-[(4S)-2-methyl-4-{1-[(1-{4-[(pyridin-4-yl)sulfonyl]phenyl}azetidin-3-yl)methyl]piperidin-4-yl}-1,2,3,4-tetrahydroisoquinolin-4-yl]cyclopentyl methylcarbamate(Non-covalent)

HL7.1: 21 residues within 4Å: Chain A: S.155, S.178, E.179, D.180, H.181, F.238, C.241, A.242, Y.276, M.278, N.282, Y.319, M.322, Y.323, A.325, G.326, W.341, E.363, V.367, V.371 Ligands: 7PR.6 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:F.238, A:A.242, A:Y.319, A:M.322, A:E.363 Hydrogen bonds: A:Y.276, A:M.278 Salt bridges: A:D.180

5 x 7PR: praseodymium triacetate(Non-covalent)

7PR.2: 6 residues within 4Å: Chain A: F.365, E.366, N.369, D.370, F.439 Ligands: 7PR.6 3 PLIP interactions: 3 interactions with chain A, Hydrophobic interactions: A:F.365, A:F.439 Hydrogen bonds: A:D.370 7PR.3: 4 residues within 4Å: Chain A: W.126, L.129, R.131, Y.133 2 PLIP interactions: 2 interactions with chain A, Hydrophobic interactions: A:W.126 Hydrogen bonds: A:Y.133 7PR.4: 4 residues within 4Å: Chain A: S.246, L.249, D.252, L.286 1 PLIP interactions: 1 interactions with chain A, Hydrophobic interactions: A:L.286 7PR.5: 1 residues within 4Å: Chain A: Y.353 0 PLIP interactions: 7PR.6: 5 residues within 4Å: Chain A: E.359, E.363, E.366 Ligands: HL7.1, 7PR.2 0 PLIP interactions:

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Aguilar, A. et al., Structure-Based Discovery of M-89 as a Highly Potent Inhibitor of the Menin-Mixed Lineage Leukemia (Menin-MLL) Protein-Protein Interaction. J.Med.Chem. (2019)

Release Date

2019-07-10

Peptides

Menin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Menin

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