SMTL ID : 6enc.1

LTA4 hydrolase in complex with Compound11

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: H.298, H.302, E.321, Y.386 Ligands: BGW.7 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.298, A:H.302, A:E.321, A:E.321, H2O.1

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.2: 3 residues within 4Å: Chain A: K.482, D.484 Ligands: YB.3 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:K.482

2 x YB: YTTERBIUM (III) ION(Non-covalent)

YB.3: 2 residues within 4Å: Chain A: D.484 Ligands: ACT.2 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:D.484, A:D.484, H2O.1, H2O.8, H2O.15 YB.4: 1 residues within 4Å: Chain A: D.178 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:D.178

2 x IMD: IMIDAZOLE(Non-covalent)

IMD.5: 8 residues within 4Å: Chain A: G.347, G.350, E.351, N.354, E.504, A.507, Q.508, Q.511 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.351, A:E.351, A:N.354 Water bridges: A:Q.508 IMD.6: 8 residues within 4Å: Chain A: S.291, L.292, S.499, H.500, N.503, N.534, E.536, I.537 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.291, A:N.534

1 x BGW: 1-[[4-(1,3-benzothiazol-2-yloxy)phenyl]methyl]piperidine-4-carboxylic acid(Non-covalent)

BGW.7: 22 residues within 4Å: Chain A: Q.137, Q.139, A.140, Y.270, G.272, M.273, E.274, H.298, E.299, H.302, W.314, F.317, E.321, V.370, L.372, P.377, D.378, A.380, Y.381, P.385, Y.386 Ligands: ZN.1 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:Q.139, A:Y.270, A:F.317, A:F.317, A:V.370, A:Y.381, A:Y.381, A:Y.381, A:P.385 Water bridges: A:Q.139, A:G.272 Salt bridges: A:H.298, A:H.302 pi-Cation interactions: A:Y.270

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Numao, S. et al., Feasibility and physiological relevance of designing highly potent aminopeptidase-sparing leukotriene A4 hydrolase inhibitors. Sci Rep (2017)

Release Date

2017-12-13

Peptides

Leukotriene A-4 hydrolase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Leukotriene A-4 hydrolase

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