SMTL ID : 8qow.1

LTA4 hydrolase in complex with compound 2(S)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.35 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: H.298, H.302, E.321, Y.386 Ligands: WID.7 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.298, A:H.302, A:E.321, A:E.321

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.2: 2 residues within 4Å: Chain A: K.482, D.484 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:K.482 Water bridges: A:K.482

2 x YB: YTTERBIUM (III) ION(Non-covalent)

YB.3: 1 residues within 4Å: Chain A: D.178 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:D.178 YB.4: 1 residues within 4Å: Chain A: D.429 No protein-ligand interaction detected (PLIP)

2 x IMD: IMIDAZOLE(Non-covalent)

IMD.5: 8 residues within 4Å: Chain A: G.347, G.350, E.351, N.354, E.504, A.507, Q.508, Q.511 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.351, A:Q.508 Water bridges: A:G.350, A:R.540 IMD.6: 8 residues within 4Å: Chain A: S.291, L.292, S.499, H.500, N.503, N.534, E.536, I.537 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.291, A:H.500, A:N.534

1 x WID: (2~{S})-2-azanyl-3-[3-[4-[3-fluoranyl-5-(1~{H}-pyrazol-5-yl)pyridin-2-yl]oxyphenyl]pyrazol-1-yl]propan-1-ol(Non-covalent)

WID.7: 25 residues within 4Å: Chain A: Q.137, Q.139, A.140, Y.270, G.272, M.273, E.274, H.298, E.299, H.302, W.314, F.317, E.321, F.365, K.367, L.368, V.370, L.372, P.377, D.378, A.380, Y.381, P.385, Y.386 Ligands: ZN.1 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:Q.139, A:Q.139, A:F.317, A:F.317, A:L.372, A:Y.381, A:Y.381, A:P.385 Hydrogen bonds: A:Q.139, A:Q.139, A:E.299 Water bridges: A:W.314, A:L.368 pi-Stacking: A:Y.270

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Thoma, G. et al., Discovery of Amino Alcohols as Highly Potent, Selective, and Orally Efficacious Inhibitors of Leukotriene A4 Hydrolase. J.Med.Chem. (2023)

Release Date

2023-12-06

Peptides

Leukotriene A-4 hydrolase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Leukotriene A-4 hydrolase

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