SMTL ID : 7auz.1

LTA4 hydrolase in complex with compound LYS006

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: H.298, H.302, E.321, Y.386 Ligands: RZE.8 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.298, A:H.302, A:E.321, A:E.321

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.2: 3 residues within 4Å: Chain A: K.482, D.484 Ligands: YB.3 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:K.482 Water bridges: A:K.482, A:D.484

3 x YB: YTTERBIUM (III) ION(Non-covalent)

YB.3: 2 residues within 4Å: Chain A: D.484 Ligands: ACT.2 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Ligand interactions Metal complexes: A:D.484, A:D.484, ACT.2 YB.4: 1 residues within 4Å: Chain A: D.178 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:D.178 YB.5: 1 residues within 4Å: Chain A: D.429 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:D.429

2 x IMD: IMIDAZOLE(Non-covalent)

IMD.6: 7 residues within 4Å: Chain A: G.347, G.350, E.351, N.354, E.504, A.507, Q.511 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.351, A:N.354 Water bridges: A:G.350 IMD.7: 8 residues within 4Å: Chain A: S.291, L.292, S.499, H.500, N.503, N.534, E.536, I.537 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.291, A:H.500, A:N.534

1 x RZE: (3~{S})-3-azanyl-4-[5-[4-(5-chloranyl-3-fluoranyl-pyridin-2-yl)oxyphenyl]-1,2,3,4-tetrazol-2-yl]butanoic acid(Non-covalent)

RZE.8: 21 residues within 4Å: Chain A: Q.137, Q.139, A.140, Y.270, G.272, M.273, E.274, H.298, E.299, H.302, W.314, F.317, E.321, V.370, L.372, P.377, D.378, Y.381, P.385, Y.386 Ligands: ZN.1 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:Q.139, A:A.140, A:F.317, A:F.317, A:L.372, A:Y.381 Hydrogen bonds: A:Q.137, A:E.299, A:E.321, A:Y.386 Water bridges: A:Q.139 Salt bridges: A:H.298, A:H.302 pi-Stacking: A:Y.270

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Markert, C. et al., Discovery of LYS006, a Potent and Highly Selective Inhibitor of Leukotriene A 4 Hydrolase. J.Med.Chem. (2021)

Release Date

2021-02-17

Peptides

Leukotriene A-4 hydrolase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Leukotriene A-4 hydrolase

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