SMTL ID : 8rx9.1

LTA4 hydrolase in complex with compound3

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.90 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 7 residues within 4Å: Chain A: E.274, H.298, E.299, H.302, E.321, Y.386 Ligands: 01.8 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.298, A:H.302, A:E.321

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.2: 3 residues within 4Å: Chain A: K.482, D.484 Ligands: YB.3 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:K.482

3 x YB: YTTERBIUM (III) ION(Non-covalent)

YB.3: 3 residues within 4Å: Chain A: D.484, D.485 Ligands: ACT.2 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.484, A:D.484, H2O.1 YB.4: 1 residues within 4Å: Chain A: D.178 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:D.178, A:D.178 YB.5: 1 residues within 4Å: Chain A: D.429 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:D.429

2 x IMD: IMIDAZOLE(Non-covalent)

IMD.6: 7 residues within 4Å: Chain A: G.347, G.350, E.351, E.504, A.507, Q.508, Q.511 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.504, A:Q.511 IMD.7: 6 residues within 4Å: Chain A: S.291, L.292, S.499, H.500, N.503, N.534 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.291, A:N.503, A:N.534 pi-Cation interactions: A:H.500

1 x 01: 1-[[5-[5-(1~{H}-pyrazol-5-yl)pyridin-2-yl]oxypyridin-2-yl]methyl]piperidin-4-ol

01.8: 18 residues within 4Å: Chain A: Q.137, Q.139, A.140, Y.270, G.272, M.273, W.314, F.317, K.367, L.368, V.370, L.372, P.377, Y.381, V.384, P.385, Y.386 Ligands: ZN.1 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:Y.270, A:V.370, A:Y.381, A:P.385 Hydrogen bonds: A:K.367, A:Y.386 Water bridges: A:G.272 pi-Stacking: A:F.317 pi-Cation interactions: A:Y.270

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Thoma, G. et al., Structure-Guided Elaboration of a Fragment-Like Hit into an Orally Efficacious Leukotriene A4 Hydrolase Inhibitor. J.Med.Chem. (2024)

Release Date

2024-03-20

Peptides

Leukotriene A-4 hydrolase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Leukotriene A-4 hydrolase

Related Entries With Identical Sequence