- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- hetero-1-1-1-1-3-3-2-2-2-2-mer
- Ligands
- 2 x AGS: PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER(Non-covalent)
AGS.1: 14 residues within 4Å:- Chain A: Q.617, R.619, Q.622, M.645, G.646, L.647, G.648, K.649, T.650, I.651, E.685, W.689, E.747
- Ligands: MG.2
9 PLIP interactions:9 interactions with chain A- Hydrogen bonds: A:Q.617, A:Q.622, A:G.646, A:L.647, A:G.648, A:K.649, A:T.650, A:E.685
- Salt bridges: A:K.649
AGS.3: 21 residues within 4Å:- Chain C: G.9, A.10, Y.11, N.12, K.14, D.149, G.151, Y.152, S.153, F.154, G.177, N.203, K.206, E.207, G.321, G.322, N.323, L.325, F.326, I.356
- Ligands: MG.4
13 PLIP interactions:13 interactions with chain C- Hydrogen bonds: C:A.10, C:Y.11, C:N.12, C:Y.152, C:N.203, C:N.203, C:K.206, C:E.207, C:E.207, C:G.322
- Salt bridges: C:K.14, C:K.14
- pi-Stacking: C:F.326
- 5 x MG: MAGNESIUM ION(Non-covalent)
MG.2: 2 residues within 4Å:- Chain A: E.747
- Ligands: AGS.1
2 PLIP interactions:2 interactions with chain A- Metal complexes: A:E.747, A:E.747
MG.4: 2 residues within 4Å:- Chain C: D.149
- Ligands: AGS.3
No protein-ligand interaction detected (PLIP)MG.8: 6 residues within 4Å:- Chain E: E.320, R.357
- Chain J: T.84, D.299, E.300
- Ligands: ADP.15
1 PLIP interactions:1 interactions with chain J- Metal complexes: J:T.84
MG.10: 6 residues within 4Å:- Chain F: T.84, D.299, E.300
- Chain G: E.320, R.357
- Ligands: ADP.9
1 PLIP interactions:1 interactions with chain F- Metal complexes: F:T.84
MG.13: 4 residues within 4Å:- Chain H: T.84, D.299
- Chain I: R.357
- Ligands: ADP.12
1 PLIP interactions:1 interactions with chain H- Metal complexes: H:T.84
- 2 x ZN: ZINC ION(Non-covalent)
ZN.5: 4 residues within 4Å:- Chain D: C.128, C.131, H.144, C.149
4 PLIP interactions:4 interactions with chain D- Metal complexes: D:C.128, D:C.131, D:H.144, D:C.149
ZN.6: 4 residues within 4Å:- Chain D: C.117, C.120, C.136, C.140
4 PLIP interactions:4 interactions with chain D- Metal complexes: D:C.117, D:C.120, D:C.136, D:C.140
- 6 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)
ADP.7: 20 residues within 4Å:- Chain E: S.17, H.18, H.20, G.38, L.39, V.40, P.71, P.72, G.73, T.74, G.75, K.76, T.77, A.78, Y.366, I.374, R.404
- Chain F: R.314, E.317, R.353
20 PLIP interactions:16 interactions with chain E, 4 interactions with chain F- Hydrogen bonds: E:H.18, E:V.40, E:G.41, E:G.73, E:T.74, E:G.75, E:K.76, E:T.77, E:T.77, E:T.77, E:A.78, E:Y.366, F:R.353, F:R.353
- Salt bridges: E:H.18, E:K.76, E:R.404, E:R.404, F:R.314, F:R.314
ADP.9: 19 residues within 4Å:- Chain F: A.24, H.25, H.27, I.28, G.45, M.46, V.47, P.79, G.80, T.81, G.82, K.83, T.84, A.85, Y.362, L.399, R.400, I.403
- Ligands: MG.10
15 PLIP interactions:15 interactions with chain F- Hydrogen bonds: F:H.25, F:V.47, F:G.80, F:T.81, F:G.82, F:K.83, F:T.84, F:T.84, F:A.85, F:Y.362, F:Y.362
- Salt bridges: F:H.25, F:K.83, F:R.400, F:R.400
ADP.11: 19 residues within 4Å:- Chain G: S.17, H.18, H.20, G.38, L.39, V.40, P.71, P.72, G.73, T.74, G.75, K.76, T.77, A.78, Y.366, I.374, R.404
- Chain H: R.314, R.353
16 PLIP interactions:14 interactions with chain G, 2 interactions with chain H- Hydrogen bonds: G:H.18, G:V.40, G:G.73, G:T.74, G:G.75, G:K.76, G:T.77, G:A.78, G:Y.366, G:Y.366, H:R.353
- Salt bridges: G:H.18, G:K.76, G:R.404, G:R.404, H:R.314
ADP.12: 18 residues within 4Å:- Chain H: A.24, H.25, H.27, G.45, M.46, V.47, P.79, G.80, T.81, G.82, K.83, T.84, A.85, Y.362, I.370, L.399, R.400
- Ligands: MG.13
15 PLIP interactions:15 interactions with chain H- Hydrogen bonds: H:H.25, H:V.47, H:G.80, H:T.81, H:G.82, H:K.83, H:T.84, H:T.84, H:A.85, H:Y.362, H:Y.362
- Salt bridges: H:H.25, H:K.83, H:R.400, H:R.400
ADP.14: 18 residues within 4Å:- Chain I: S.17, H.18, H.20, G.38, L.39, V.40, P.71, G.73, T.74, G.75, K.76, T.77, A.78, Y.366, I.374, R.404
- Chain J: R.314, R.353
19 PLIP interactions:3 interactions with chain J, 16 interactions with chain I- Hydrogen bonds: J:R.314, J:R.353, I:H.18, I:V.40, I:G.73, I:T.74, I:T.74, I:G.75, I:K.76, I:T.77, I:T.77, I:A.78, I:Y.366, I:Y.366
- Salt bridges: J:R.314, I:H.18, I:K.76, I:R.404, I:R.404
ADP.15: 22 residues within 4Å:- Chain E: R.357
- Chain J: A.24, H.25, H.27, I.28, G.45, M.46, V.47, Q.78, P.79, G.80, T.81, G.82, K.83, T.84, A.85, Y.362, I.370, L.399, R.400, I.403
- Ligands: MG.8
17 PLIP interactions:16 interactions with chain J, 1 interactions with chain E- Hydrogen bonds: J:H.25, J:V.47, J:Q.78, J:G.80, J:T.81, J:G.82, J:K.83, J:T.84, J:T.84, J:A.85, J:Y.362, J:Y.362, E:R.357
- Salt bridges: J:H.25, J:K.83, J:R.400, J:R.400
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Park, G. et al., Structural divergence of H2A.Z-associated human chromatin remodelers SRCAP and TIP60. To Be Published
- Release Date
- 2025-06-18
- Peptides
- Helicase SRCAP: A
Vacuolar protein sorting-associated protein 72 homolog: B
Actin-related protein 6: C
Zinc finger HIT domain-containing protein 1: D
RuvB-like 1: EGI
RuvB-like 2: FHJ
Histone H2A type 1: KM
Histone H2B 1.1: LN
Histone H3.2: OQ
Histone H4: PR - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EG
GI
IF
FH
HJ
JK
QM
SL
RN
TO
UQ
WP
VR
X
SMTL ID : 9ca8.1
Cryo-EM structure of human SRCAP-nucleosome complex in the partially-engaged state (composite structure)
Helicase SRCAP
Vacuolar protein sorting-associated protein 72 homolog
Actin-related protein 6
Zinc finger HIT domain-containing protein 1
RuvB-like 1
RuvB-like 2
Histone H2A type 1
Histone H2B 1.1
Histone H3.2
Histone H4
Related Entries With Identical Sequence
1kx3.1 | 1kx4.1 | 1kx5.1 | 1m18.1 | 1m19.1 | 1m1a.1 | 1p34.1 | 1p3a.1 | 1p3k.1 | 1p3l.1 | 1p3m.1 | 1s32.1 | 1zbb.1 | 1zla.1 | 2c9o.1 | 2c9o.2 | 2fj7.1 | 2io5.1 | 2nzd.1 | 3b6f.1 | 3b6g.1 | 3c1b.1 | 3c1c.1 | 3c9k.1 | 3c9k.2 | 3kuy.1 | 3kxb.1 | 3lel.1 | 3lel.2 | 3lja.1 more...less...3lz0.1 | 3lz1.1 | 3mgp.1 | 3mgq.1 | 3mgr.1 | 3mgs.1 | 3mnn.1 | 3mvd.1 | 3o62.1 | 3reh.1 | 3rei.1 | 3rej.1 | 3rek.1 | 3rel.1 | 3tu4.1 | 3tu4.2 | 3ut9.1 | 3uta.1 | 3utb.1 | 3x1s.1 | 3x1t.1 | 3x1u.1 | 3x1v.1 | 4h9n.1 | 4h9o.1 | 4h9p.1 | 4h9p.2 | 4h9q.1 | 4h9q.2 | 4h9r.1 | 4h9r.2 | 4j8u.1 | 4j8v.1 | 4j8v.2 | 4j8v.3 | 4j8w.1 | 4j8x.1 | 4j8x.2 | 4j8x.3 | 4r8p.1 | 4wu8.1 | 4wu9.1 | 4xuj.1 | 5bnv.1 | 5bnx.1 | 5bo0.1 | 5bs7.1 | 5bsa.1 | 5cp6.1 | 5dnm.1 | 5dnn.1 | 5gsu.1 | 5gt0.1 | 5gt3.1 | 5hq2.1 | 5ja4.1 | 5kdm.1 | 5nl0.1 | 5nl0.2 | 5oaf.1 | 5oxv.1 | 5oy7.1 | 5x0x.1 | 5x0y.1 | 5xf6.1 | 5z3l.1 | 5z3o.1 | 5z3u.1 | 5z3v.1 | 6esf.1 | 6esg.1 | 6esh.1 | 6esi.1 | 6fml.1 | 6fo1.1 | 6h7x.1 | 6hts.1 | 6igm.1 | 6iro.1 | 6jyl.1 | 6k1p.1 | 6kiu.1 | 6kiv.1 | 6kiw.1 | 6kix.1 | 6kiz.1 | 6nj9.1 | 6nn6.1 | 6nog.1 | 6nqa.1 | 6o96.1 | 6om3.1 | 6om3.2 | 6pa7.1 | 6qi8.1 | 6qi9.1 | 6r1u.1 | 6r25.1 | 6s01.1 | 6t9l.1 | 6tda.1 | 6ugm.1 | 6uh5.1 | 6uxw.1 | 6ven.1 | 6vyp.1 | 6vyp.2 | 6wz5.1 | 6wz9.1 | 6x0n.1 | 6x59.1 | 6x5a.1 | 6xjd.1 | 7a08.1 | 7at8.1 | 7bwd.1 | 7ciz.1 | 7ciz.2 | 7ciz.3 | 7cj0.1 | 7cj0.2 | 7cro.1 | 7crp.1 | 7crq.1 | 7crr.1 | 7e8d.1 | 7e8i.1 | 7eg6.1 | 7egp.1 | 7enn.1 | 7jzv.1 | 7oh9.1 | 7oha.1 | 7ohb.1 | 7ohc.1 | 7ole.1 | 7p6x.1 | 7ssa.1 | 7swy.1 | 7tn2.1 | 7u50.1 | 7u51.1 | 7u52.1 | 7u53.1 | 7uv9.1 | 7v1m.1 | 7v1m.2 | 7xpx.1 | 7y8r.1 | 7yi1.1 | 7yi4.1 | 7yi5.1 | 7zi4.1 | 7zs9.1 | 7zsa.1 | 7zsb.1 | 8atf.1 | 8av6.1 | 8cbn.1 | 8cbq.1 | 8ceo.1 | 8cww.1 | 8cze.1 | 8f86.1 | 8g86.1 | 8g88.1 | 8g8b.1 | 8g8g.1 | 8gui.1 | 8guj.1 | 8guk.1 | 8hag.1 | 8hah.1 | 8hai.1 | 8haj.1 | 8hak.1 | 8hal.1 | 8ham.1 | 8han.1 | 8hxy.1 | 8hxz.1 | 8hy0.1 | 8ihm.1 | 8iht.1 | 8jbx.1 | 8jcc.1 | 8jcd.1 | 8jho.1 | 8kd2.1 | 8kd3.1 | 8kd4.1 | 8kd5.1 | 8kd6.1 | 8kd7.1 | 8oo7.1 | 8ooa.1 | 8oop.1 | 8oos.1 | 8pc5.1 | 8pc6.1 | 8peo.1 | 8pep.1 | 8qr1.1 | 8qzm.1 | 8rgm.1 | 8rup.1 | 8ruq.1 | 8siy.1 | 8t3t.1 | 8t3w.1 | 8t3y.1 | 8t9f.1 | 8t9h.1 | 8thu.1 | 8uxq.1 | 8v4y.1 | 8v6v.1 | 8v7l.1 | 8vws.1 | 8vwt.1 | 8vwu.1 | 8vwv.1 | 8x15.1 | 8x19.1 | 8x1c.1 | 8xrj.1 | 8xvg.1 | 8xvs.1 | 8xvt.1 | 8yv8.1 | 9c57.1 | 9c62.1 | 9ca7.1 | 9ca9.1 | 9caa.1 | 9cab.1 | 9cac.1 | 9cae.1 | 9dwf.1 | 9dwg.1 | 9dwh.1 | 9dwi.1 | 9dwj.1 | 9dwk.1 | 9dwl.1 | 9dwm.1 | 9eoz.1 | 9gxa.1 | 9ipu.1 | 9jnp.1 | 9jnt.1 | 9jnu.1 | 9jnv.1 | 9jnw.1 | 9jnx.1 | 9jnz.1 | 9jo2.1 | 9jo5.1 | 9l1x.1 | 9l22.1 | 9liu.1 | 9qaj.1