- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- hetero-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-2-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-mer
- Ligands
- 12 x 3PE: 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOETHANOLAMINE(Non-covalent)
- 6 x SF4: IRON/SULFUR CLUSTER(Non-covalent)
SF4.2: 10 residues within 4Å:- Chain B: A.98, C.99, C.100, G.135, S.163, C.164, C.194, P.195
- Chain D: R.138, H.223
5 PLIP interactions:5 interactions with chain B,- Metal complexes: B:C.99, B:C.100, B:C.164, B:C.194, B:C.194
SF4.5: 10 residues within 4Å:- Chain F: I.176, P.194, C.350, G.351, Q.352, C.353, C.356, T.394, C.396, L.398
5 PLIP interactions:5 interactions with chain F,- Salt bridges: F:E.348
- Metal complexes: F:C.350, F:C.353, F:C.356, F:C.396
SF4.6: 12 residues within 4Å:- Chain D: I.379
- Chain G: H.124, P.125, D.127, C.128, C.131, Q.133, C.137, L.139, Q.140, V.228, G.229
4 PLIP interactions:4 interactions with chain G,- Metal complexes: G:H.124, G:C.128, G:C.131, G:C.137
SF4.7: 11 residues within 4Å:- Chain G: M.173, C.176, I.177, Q.178, C.179, T.180, R.181, C.182, V.206, C.226, L.231
4 PLIP interactions:4 interactions with chain G,- Metal complexes: G:C.176, G:C.179, G:C.182, G:C.226
SF4.15: 11 residues within 4Å:- Chain I: H.101, C.123, I.128, C.152, I.153, Y.154, C.155, G.156, F.157, C.158, E.169
5 PLIP interactions:5 interactions with chain I,- Salt bridges: I:E.169
- Metal complexes: I:C.123, I:C.152, I:C.155, I:C.158
SF4.16: 11 residues within 4Å:- Chain I: C.113, I.114, A.115, C.116, K.117, L.118, C.119, I.130, C.162, A.166, I.167
4 PLIP interactions:4 interactions with chain I,- Metal complexes: I:C.113, I:C.116, I:C.119, I:C.162
- 2 x FES: FE2/S2 (INORGANIC) CLUSTER(Non-covalent)
FES.3: 10 residues within 4Å:- Chain E: C.134, T.136, P.138, C.139, C.175, L.176, G.177, A.178, C.179
- Chain F: P.93
4 PLIP interactions:4 interactions with chain E,- Metal complexes: E:C.134, E:C.139, E:C.175, E:C.179
FES.8: 8 residues within 4Å:- Chain G: R.62, F.63, C.64, G.73, C.75, R.76, C.78, C.92
4 PLIP interactions:4 interactions with chain G,- Metal complexes: G:C.64, G:C.75, G:C.78, G:C.92
- 1 x FMN: FLAVIN MONONUCLEOTIDE(Non-covalent)
FMN.4: 19 residues within 4Å:- Chain F: G.58, R.59, G.60, K.69, N.87, D.89, E.90, Y.175, I.176, G.178, E.179, E.180, V.213, A.214, N.215, T.218, C.396, A.397, L.398
16 PLIP interactions:16 interactions with chain F- Hydrophobic interactions: F:Y.175, F:Y.175, F:I.176, F:E.179, F:A.397, F:L.398
- Hydrogen bonds: F:R.59, F:G.60, F:K.69, F:N.87, F:D.89, F:E.180, F:N.215, F:N.215, F:T.218
- Salt bridges: F:K.69
- 4 x PC1: 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE(Non-covalent)
PC1.10: 11 residues within 4Å:- Chain H: S.67, M.68, S.69, L.70, I.73
- Chain J: L.30, W.82, G.83, V.96
- Chain P: R.286
- Ligands: 3PE.9
9 PLIP interactions:3 interactions with chain J, 6 interactions with chain H- Hydrophobic interactions: J:L.30, J:W.82, J:V.96, H:L.70, H:I.73
- Hydrogen bonds: H:S.67, H:M.68, H:S.69, H:S.69
PC1.12: 16 residues within 4Å:- Chain H: M.183, L.243, W.272
- Chain I: D.55, T.64, I.67, R.68, G.71, L.74
- Chain Z: R.28, G.29, L.30, S.31, M.35
- Ligands: 3PE.11
- Chain h: W.14
12 PLIP interactions:6 interactions with chain I, 3 interactions with chain Z, 1 interactions with chain h, 2 interactions with chain H- Hydrophobic interactions: I:I.67, I:I.67, I:L.74, Z:L.30, h:W.14, H:L.243, H:W.272
- Hydrogen bonds: I:T.64, Z:R.28
- Salt bridges: I:D.55, I:R.68, Z:R.28
PC1.14: 11 residues within 4Å:- Chain B: D.80, L.81, W.84, R.87, K.213
- Chain H: I.39, V.40, L.46
- Chain g: R.29, N.31, W.75
8 PLIP interactions:7 interactions with chain B, 1 interactions with chain H- Hydrophobic interactions: B:D.80, B:L.81, B:L.81, B:W.84, B:W.84, H:L.46
- Salt bridges: B:R.87, B:K.213
PC1.30: 14 residues within 4Å:- Chain A: L.24, Q.26
- Chain B: I.82, K.217, L.218, I.220, W.221, R.224
- Chain H: A.52, M.53, F.56
- Chain P: D.90, F.310, E.311
11 PLIP interactions:5 interactions with chain P, 2 interactions with chain H, 2 interactions with chain A, 2 interactions with chain B- Hydrophobic interactions: P:F.310, P:F.310, H:A.52, H:F.56, A:L.24, A:Q.26, B:L.218
- Hydrogen bonds: P:E.311
- Salt bridges: P:D.90, P:E.311, B:R.224
- 4 x CDL: CARDIOLIPIN(Non-covalent)
CDL.13: 14 residues within 4Å:- Chain 0: M.1, W.2, F.3, L.6
- Chain H: Y.43
- Chain g: L.3, V.6, R.9, G.10, Q.13
- Chain h: S.3, T.5, V.7, I.8
8 PLIP interactions:3 interactions with chain 0, 1 interactions with chain H, 2 interactions with chain g, 2 interactions with chain h- Hydrophobic interactions: 0:F.3, 0:L.6, H:Y.43, g:L.3, h:V.7
- Hydrogen bonds: 0:W.2, h:S.3
- Salt bridges: g:R.9
CDL.18: 23 residues within 4Å:- Chain 6: L.97
- Chain 7: L.68, M.71, G.79, I.83
- Chain L: S.22, M.23, R.116, K.119, Y.120, L.123, T.127, I.142, M.150, L.153
- Chain M: P.353, L.354, T.357, P.371, I.442, L.446
- Ligands: CDL.19, 3PE.20
16 PLIP interactions:2 interactions with chain 7, 5 interactions with chain M, 8 interactions with chain L, 1 interactions with chain 6- Hydrophobic interactions: 7:L.68, 7:I.83, M:P.371, M:P.371, M:I.442, M:L.446, L:M.23, L:L.123, L:T.127, L:I.142, 6:L.97
- Hydrogen bonds: M:P.353, L:Y.120
- Salt bridges: L:K.119, L:K.119, L:K.119
CDL.19: 28 residues within 4Å:- Chain 6: V.98, T.101, T.102, A.105
- Chain 7: V.82, I.86, T.87, N.90, I.91, E.95, H.115
- Chain 8: W.80, F.81, Y.84, H.89
- Chain L: W.66, W.68, L.76, K.77, M.78, N.136, F.138
- Chain M: T.449
- Ligands: CDL.18, 3PE.20, 3PE.23
- Chain f: R.49, H.56
19 PLIP interactions:7 interactions with chain 7, 3 interactions with chain L, 2 interactions with chain 6, 1 interactions with chain f, 6 interactions with chain 8- Hydrophobic interactions: 7:V.82, 7:I.86, 7:T.87, L:W.66, L:L.76, L:F.138, 6:V.98, 6:A.105, 8:W.80, 8:W.80, 8:F.81, 8:Y.84, 8:Y.84
- Hydrogen bonds: 7:N.90, 7:N.90, 7:E.95
- Salt bridges: 7:H.115, f:R.49, 8:H.89
CDL.27: 23 residues within 4Å:- Chain 3: N.27, D.28, P.29, V.32, Y.33
- Chain 5: F.22, L.26, K.29, K.33
- Chain M: L.2, M.55, I.120, L.121
- Chain N: P.256, L.257, T.334, L.337, P.338
- Chain X: F.169, W.170, T.171, V.172
- Ligands: 3PE.25
15 PLIP interactions:5 interactions with chain 3, 3 interactions with chain 5, 2 interactions with chain X, 3 interactions with chain M, 2 interactions with chain N- Hydrophobic interactions: 3:P.29, 3:Y.33, 3:Y.33, 5:F.22, 5:L.26, X:F.169, M:L.2, M:I.120, M:L.121, N:L.257, N:L.337
- Hydrogen bonds: 3:N.27, X:T.171
- Salt bridges: 3:K.25, 5:K.33
- 1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)
ADP.29: 16 residues within 4Å:- Chain O: N.65, I.66, C.67, G.69, K.70, N.71, Y.118, Q.132, L.135, R.139, E.160, R.161, F.169, K.221, E.226, Y.233
12 PLIP interactions:12 interactions with chain O- Hydrogen bonds: O:G.69, O:E.88, O:E.88, O:Y.118, O:Q.132, O:R.139, O:E.160, O:R.161, O:E.226, O:Y.233
- Salt bridges: O:K.221
- pi-Stacking: O:F.169
- 1 x NDP: NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)
NDP.31: 22 residues within 4Å:- Chain B: R.224
- Chain P: G.60, T.62, G.63, F.64, L.65, R.85, C.86, W.108, L.129, I.130, G.131, R.132, F.139, V.144, V.167, H.169, K.184, S.204, D.205, I.206, R.212
20 PLIP interactions:19 interactions with chain P, 1 interactions with chain B- Hydrophobic interactions: P:I.206
- Hydrogen bonds: P:G.60, P:T.62, P:T.62, P:T.62, P:F.64, P:L.65, P:R.85, P:I.130, P:G.131, P:K.184, P:D.205, P:R.212
- Salt bridges: P:R.85, P:R.132, P:R.132, P:R.212, P:R.212, B:R.224
- pi-Cation interactions: P:R.85
- 1 x ZN: ZINC ION(Non-covalent)
- 2 x EHZ: ~{S}-[2-[3-[[(2~{R})-3,3-dimethyl-2-oxidanyl-4-phosphonooxy-butanoyl]amino]propanoylamino]ethyl] (3~{S})-3-oxidanyltetradecanethioate(Covalent)
EHZ.33: 19 residues within 4Å:- Chain T: S.112
- Chain W: K.32, V.35, R.36, W.42, T.49, L.55, I.57, G.62, V.66, F.70, N.73, A.74, V.76, L.85, G.89, E.92, V.106, F.109
9 PLIP interactions:9 interactions with chain W- Hydrophobic interactions: W:W.42, W:W.42, W:L.55, W:I.57, W:V.66, W:F.70, W:V.106, W:F.109
- Salt bridges: W:K.32
EHZ.34: 19 residues within 4Å:- Chain L: M.513
- Chain U: D.111, S.112, L.113
- Chain d: H.12, Q.13, V.16, A.23, H.26, R.47, F.48, H.51, K.52, A.60, L.63, A.67, E.70, F.71, N.74
12 PLIP interactions:2 interactions with chain U, 10 interactions with chain d- Hydrogen bonds: U:S.112, U:L.113, d:Q.13, d:H.51, d:K.52
- Hydrophobic interactions: d:A.23, d:F.48, d:K.52, d:F.71, d:F.71, d:F.71
- Salt bridges: d:K.52
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Agip, A.A. et al., Cryo-EM structures of complex I from mouse heart mitochondria in two biochemically defined states. Nat. Struct. Mol. Biol. (2018)
- Release Date
- 2018-06-06
- Peptides
- NADH-ubiquinone oxidoreductase chain 3: A
NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial: B
NADH dehydrogenase [ubiquinone] iron-sulfur protein 3, mitochondrial: C
NADH dehydrogenase [ubiquinone] iron-sulfur protein 2, mitochondrial: D
NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial: E
NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial: F
NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial: G
NADH-ubiquinone oxidoreductase chain 1: H
NADH dehydrogenase [ubiquinone] iron-sulfur protein 8, mitochondrial: I
NADH-ubiquinone oxidoreductase chain 6: J
NADH-ubiquinone oxidoreductase chain 4L: K
NADH-ubiquinone oxidoreductase chain 5: L
NADH-ubiquinone oxidoreductase chain 4: M
NADH-ubiquinone oxidoreductase chain 2: N
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 10, mitochondrial: O
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial: P
NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial: Q
NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial: R
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2: S
Acyl carrier protein, mitochondrial: TU
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5: V
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6: W
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8: X
MCG5603: Y
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13: Z
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 1: 0
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 3: 1
NADH dehydrogenase [ubiquinone] 1 subunit C1, mitochondrial: 2
NADH dehydrogenase [ubiquinone] 1 subunit C2: 3
NADH dehydrogenase [ubiquinone] iron-sulfur protein 5: 4
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 1: 5
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 11, mitochondrial: 6
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 5, mitochondrial: 7
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 6: 8
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2, mitochondrial: 9
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 3: a
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8, mitochondrial: b
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 4: c
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9: d
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7: e
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10: f
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12: g
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 7: h
NADH dehydrogenase [ubiquinone] flavoprotein 3, mitochondrial: i - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
FG
GH
HI
IJ
JK
KL
LM
MN
NO
OP
PQ
QR
RS
ST
TU
UV
VW
WX
XY
YZ
Z0
a1
b2
c3
d4
e5
f6
g7
h8
i9
ja
kb
lc
md
ne
of
pg
qh
ri
s - Membrane
-
We predict this structure to be a membrane protein.
SMTL ID : 6g2j.1
Mouse mitochondrial complex I in the active state
NADH-ubiquinone oxidoreductase chain 3
NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial
NADH dehydrogenase [ubiquinone] iron-sulfur protein 3, mitochondrial
NADH dehydrogenase [ubiquinone] iron-sulfur protein 2, mitochondrial
NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial
NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial
NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial
NADH-ubiquinone oxidoreductase chain 1
NADH dehydrogenase [ubiquinone] iron-sulfur protein 8, mitochondrial
NADH-ubiquinone oxidoreductase chain 6
NADH-ubiquinone oxidoreductase chain 4L
NADH-ubiquinone oxidoreductase chain 5
NADH-ubiquinone oxidoreductase chain 4
NADH-ubiquinone oxidoreductase chain 2
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 10, mitochondrial
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial
NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial
NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2
Acyl carrier protein, mitochondrial
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8
MCG5603
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 1
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 3
NADH dehydrogenase [ubiquinone] 1 subunit C1, mitochondrial
NADH dehydrogenase [ubiquinone] 1 subunit C2
NADH dehydrogenase [ubiquinone] iron-sulfur protein 5
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 1
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 11, mitochondrial
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 5, mitochondrial
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 6
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2, mitochondrial
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 3
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8, mitochondrial
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 4
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 7
NADH dehydrogenase [ubiquinone] flavoprotein 3, mitochondrial
Related Entries With Identical Sequence
6g72.1 | 6zr2.1 | 6ztq.1 | 7ak5.1 | 7ak6.1 | 7b93.1 | 7psa.1 | 8c2s.1 | 8ca3.1 | 8ca4.1 | 8ca5.1 | 8iap.1 | 8iaq.1 | 8ib5.1 | 8ib6.1 | 8iba.1 | 8ibb.1 | 8ibe.1 | 8ibf.1 | 8ic3.1 | 8ic4.1 | 8olt.1 | 8om1.1 | 8pw5.37 | 8pw5.38 | 8pw5.39 | 8pw5.40 | 8pw5.42 | 8pw5.43 | 8pw5.44 more...less...8pw5.45 | 8pw5.46 | 8pw5.47 | 8pw5.48 | 8pw5.49 | 8pw5.50 | 8pw5.51 | 8pw5.52 | 8pw5.53 | 8pw5.54 | 8pw5.55 | 8pw5.56 | 8pw5.57 | 8pw5.58 | 8pw5.59 | 8pw5.60 | 8pw5.61 | 8pw5.62 | 8pw5.63 | 8pw5.65 | 8pw5.67 | 8pw5.68 | 8pw5.69 | 8pw5.70 | 8pw5.71 | 8pw5.72 | 8pw5.73 | 8pw5.74 | 8pw5.75 | 8pw5.76 | 8pw5.77 | 8pw5.78 | 8pw5.79 | 8pw5.80 | 8pw5.81 | 8pw6.35 | 8pw6.36 | 8pw6.37 | 8pw6.38 | 8pw6.40 | 8pw6.41 | 8pw6.42 | 8pw6.43 | 8pw6.44 | 8pw6.45 | 8pw6.46 | 8pw6.47 | 8pw6.48 | 8pw6.49 | 8pw6.50 | 8pw6.51 | 8pw6.52 | 8pw6.53 | 8pw6.54 | 8pw6.55 | 8pw6.56 | 8pw6.57 | 8pw6.58 | 8pw6.59 | 8pw6.60 | 8pw6.61 | 8pw6.63 | 8pw6.65 | 8pw6.66 | 8pw6.67 | 8pw6.68 | 8pw6.69 | 8pw6.70 | 8pw6.71 | 8pw6.72 | 8pw6.73 | 8pw6.74 | 8pw6.75 | 8pw6.76 | 8pw6.77 | 8pw6.78 | 8pw6.79 | 8pw7.34 | 8pw7.35 | 8pw7.36 | 8pw7.37 | 8pw7.39 | 8pw7.40 | 8pw7.41 | 8pw7.42 | 8pw7.43 | 8pw7.44 | 8pw7.45 | 8pw7.46 | 8pw7.47 | 8pw7.48 | 8pw7.49 | 8pw7.50 | 8pw7.51 | 8pw7.52 | 8pw7.53 | 8pw7.54 | 8pw7.55 | 8pw7.56 | 8pw7.57 | 8pw7.58 | 8pw7.59 | 8pw7.60 | 8pw7.62 | 8pw7.64 | 8pw7.65 | 8pw7.66 | 8pw7.67 | 8pw7.68 | 8pw7.69 | 8pw7.70 | 8pw7.71 | 8pw7.72 | 8pw7.73 | 8pw7.74 | 8pw7.75 | 8pw7.76 | 8pw7.77 | 8pw7.78 | 8rgp.1 | 8rgq.1 | 8rgr.1 | 8rgt.1 | 8xnl.1 | 8xnm.1 | 8xnn.1 | 8xno.1 | 8xnp.1 | 8xnq.1 | 8xnr.1 | 8xns.1 | 8xnt.1 | 8xnu.1 | 8xnv.1 | 8xnw.1 | 8xnx.1 | 8xny.1 | 8xnz.1 | 8xo0.1