- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- hetero-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-mer
- Ligands
- 9 x 3PE: 1,2-Distearoyl-sn-glycerophosphoethanolamine
- 6 x CDL: CARDIOLIPIN
CDL.2: 7 residues within 4Å:- Chain B: T.149, W.150, V.153, G.156, W.157
- Chain F: F.11, L.15
6 PLIP interactions:4 interactions with chain B, 2 interactions with chain F- Hydrophobic interactions: B:W.150, B:W.150, B:V.153, B:W.157, F:F.11, F:L.15
CDL.5: 26 residues within 4Å:- Chain D: L.16, S.22, M.23, R.116, K.119, Y.120, L.123, T.127, M.150, L.153
- Chain E: P.353, L.354, T.357, L.360, M.361, L.364, P.371, I.445
- Chain P: L.68, M.71, K.72, L.75, G.79
- Ligands: 3PE.8, CDL.14, 3PE.15
18 PLIP interactions:5 interactions with chain E, 5 interactions with chain P, 8 interactions with chain D- Hydrophobic interactions: E:L.364, E:P.371, E:I.445, E:I.445, P:L.68, P:K.72, P:K.72, P:L.75, P:L.75, D:L.16, D:L.123, D:L.123, D:T.127
- Hydrogen bonds: E:T.357, D:Y.120
- Salt bridges: D:K.119, D:K.119, D:K.119
CDL.9: 24 residues within 4Å:- Chain E: I.5, L.9, M.10, M.55, I.104, L.105, L.121
- Chain F: P.338
- Chain I: W.170, T.171, V.172
- Chain L: K.25, N.27, P.29, R.30, V.32, Y.33
- Chain N: F.22, Y.25, L.26, K.29, D.30, K.33
- Ligands: CDL.13
19 PLIP interactions:5 interactions with chain E, 2 interactions with chain N, 7 interactions with chain L, 3 interactions with chain I, 2 interactions with chain F- Hydrophobic interactions: E:I.5, E:L.9, E:I.104, E:L.105, E:L.121, N:F.22, L:R.30, L:V.32, L:V.32, L:Y.33, L:Y.33, L:Y.33, I:W.170, I:W.170, F:P.338, F:P.338
- Salt bridges: N:K.33, L:K.25
- Hydrogen bonds: I:V.172
CDL.12: 24 residues within 4Å:- Chain D: M.573, L.576, T.577, N.579, N.594, I.598
- Chain F: M.100, F.113, I.153, M.156, L.157, I.159, T.160, F.163, M.164, W.167
- Chain J: C.34, Y.41, S.42, N.46, Y.61, T.64, T.107
- Ligands: 3PE.11
17 PLIP interactions:8 interactions with chain J, 2 interactions with chain D, 7 interactions with chain F- Hydrophobic interactions: J:Y.41, J:Y.41, J:Y.61, J:T.64, D:L.576, D:I.598, F:I.153, F:L.157, F:I.159, F:I.159, F:F.163, F:F.163, F:W.167
- Hydrogen bonds: J:S.42, J:N.46, J:Y.61, J:Y.61
CDL.13: 26 residues within 4Å:- Chain E: P.13, W.16, L.17, V.90, L.94, S.97, M.98, L.105, I.127, R.135
- Chain F: P.238, L.241, T.242, S.245, L.246, P.256, S.301, M.335
- Chain G: K.338, Y.339
- Chain L: L.36, L.43, M.47, V.53, M.54
- Ligands: CDL.9
15 PLIP interactions:7 interactions with chain E, 1 interactions with chain L, 4 interactions with chain F, 3 interactions with chain G- Hydrophobic interactions: E:P.13, E:W.16, E:L.17, E:L.94, E:L.105, E:I.127, L:L.36, F:T.242, F:L.246, F:L.246, F:P.256
- Salt bridges: E:R.135
- Hydrogen bonds: G:K.338, G:Y.339, G:Y.339
CDL.14: 31 residues within 4Å:- Chain D: W.66, W.68, K.77, M.78, N.136, I.142
- Chain E: I.442, L.446, T.449
- Chain O: L.97, V.98, T.101, T.102, A.105, Y.106
- Chain P: V.82, I.86, T.87, N.90, I.91, E.95, H.115
- Chain Q: W.80, F.81, Y.84, H.89
- Chain X: V.48, R.49
- Ligands: CDL.5, 3PE.8, 3PE.15
24 PLIP interactions:6 interactions with chain Q, 7 interactions with chain P, 2 interactions with chain X, 3 interactions with chain O, 5 interactions with chain D, 1 interactions with chain E- Hydrophobic interactions: Q:W.80, Q:F.81, Q:F.81, Q:Y.84, Q:Y.84, P:V.82, P:I.86, P:T.87, X:V.48, O:V.98, O:V.98, D:W.66, D:W.68, D:W.68, D:M.78, D:I.142, E:L.446
- Salt bridges: Q:H.89, P:H.115, X:R.49
- Hydrogen bonds: P:N.90, P:N.90, P:E.95, O:Y.106
- 2 x PC1: 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
PC1.3: 14 residues within 4Å:- Chain D: K.41, F.44, I.45, S.91, V.92, F.95, W.98, F.334, K.455, R.456, F.459, G.460
- Chain R: Q.57, F.60
6 PLIP interactions:5 interactions with chain D, 1 interactions with chain R- Hydrophobic interactions: D:K.41, D:F.44, D:I.45, D:W.98, D:R.456, R:F.60
PC1.16: 11 residues within 4Å:- Chain D: F.272, T.275, T.276, C.279, L.280
- Chain T: V.141, W.145, H.148, V.149, F.150
- Chain W: Y.9
7 PLIP interactions:4 interactions with chain D, 3 interactions with chain T- Hydrophobic interactions: D:F.272, D:T.275, D:T.276, D:L.280, T:V.141, T:W.145, T:H.148
- 1 x ADP: ADENOSINE-5'-DIPHOSPHATE
ADP.10: 17 residues within 4Å:- Chain G: N.65, I.66, C.67, K.70, E.88, L.114, F.117, Y.118, Q.132, L.135, R.139, R.161, D.166, F.169, K.221, E.226, Y.233
9 PLIP interactions:9 interactions with chain G- Hydrogen bonds: G:Y.118, G:Q.132, G:Q.132, G:R.139, G:E.226
- Salt bridges: G:K.70, G:K.70, G:R.161, G:K.221
- 1 x EHZ: ~{S}-[2-[3-[[(2~{R})-3,3-dimethyl-2-oxidanyl-4-phosphonooxy-butanoyl]amino]propanoylamino]ethyl] (3~{S})-3-oxidanyltetradecanethioate
EHZ.19: 18 residues within 4Å:- Chain H: S.112, L.113
- Chain V: H.12, V.16, H.26, M.44, R.47, F.48, H.51, K.52, E.54, M.57, A.60, L.63, A.67, E.70, F.71, N.74
7 PLIP interactions:6 interactions with chain V, 1 interactions with chain H- Hydrophobic interactions: V:V.16, V:F.48, V:A.67, V:F.71, V:F.71
- Hydrogen bonds: V:E.70, H:S.112
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Shin, Y.-C. et al., Respiratory complex Membrane domain of CI, focused map of type I, Wild type mouse under thermoneutral temperature. To Be Published
- Release Date
- 2024-09-18
- Peptides
- NADH dehydrogenase [ubiquinone] iron-sulfur protein 2, mitochondrial: A
NADH-ubiquinone oxidoreductase chain 6: B
NADH-ubiquinone oxidoreductase chain 4L: C
NADH-ubiquinone oxidoreductase chain 5: D
NADH-ubiquinone oxidoreductase chain 4: E
NADH-ubiquinone oxidoreductase chain 2: F
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 10, mitochondrial: G
Acyl carrier protein, mitochondrial: H
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8: I
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 11: J
NADH dehydrogenase [ubiquinone] 1 subunit C1, mitochondrial: K
NADH dehydrogenase [ubiquinone] 1 subunit C2: L
NADH dehydrogenase [ubiquinone] iron-sulfur protein 5: M
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 1: N
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 11, mitochondrial: O
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 5, mitochondrial: P
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 6: Q
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2, mitochondrial: R
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 3: S
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8, mitochondrial: T
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 4: U
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9: V
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7: W
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10: X - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
DB
JC
KD
LE
MF
NG
OH
UI
XJ
YK
cL
dM
eN
fO
gP
hQ
iR
jS
kT
lU
mV
nW
oX
p - Membrane
-
We predict this structure to be a membrane protein.
SMTL ID : 8iaq.1
Respiratory complex Membrane domain of CI, focused map of type I, Wild type mouse under thermoneutral temperature
NADH dehydrogenase [ubiquinone] iron-sulfur protein 2, mitochondrial
NADH-ubiquinone oxidoreductase chain 6
NADH-ubiquinone oxidoreductase chain 4L
NADH-ubiquinone oxidoreductase chain 5
NADH-ubiquinone oxidoreductase chain 4
NADH-ubiquinone oxidoreductase chain 2
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 10, mitochondrial
Acyl carrier protein, mitochondrial
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 11
NADH dehydrogenase [ubiquinone] 1 subunit C1, mitochondrial
NADH dehydrogenase [ubiquinone] 1 subunit C2
NADH dehydrogenase [ubiquinone] iron-sulfur protein 5
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 1
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 11, mitochondrial
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 5, mitochondrial
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 6
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2, mitochondrial
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 3
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8, mitochondrial
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 4
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10
Related Entries With Identical Sequence
6g2j.1 | 6g72.1 | 6zr2.1 | 6ztq.1 | 7ak5.1 | 7ak6.1 | 7b93.1 | 7psa.1 | 8c2s.1 | 8ca3.1 | 8ca5.1 | 8iao.4 | 8iao.10 | 8iao.11 | 8iao.12 | 8iao.13 | 8iao.14 | 8iao.15 | 8iao.20 | 8iao.21 | 8iao.24 | 8iao.25 | 8iao.29 | 8iao.30 | 8iao.31 | 8iao.32 | 8iao.33 | 8iao.34 | 8iao.35 | 8iao.36 more...less...8iao.37 | 8iao.38 | 8iao.39 | 8iao.40 | 8iao.41 | 8iao.42 | 8iap.1 | 8ib4.4 | 8ib4.10 | 8ib4.11 | 8ib4.12 | 8ib4.13 | 8ib4.14 | 8ib4.15 | 8ib4.20 | 8ib4.21 | 8ib4.24 | 8ib4.25 | 8ib4.29 | 8ib4.30 | 8ib4.31 | 8ib4.32 | 8ib4.33 | 8ib4.34 | 8ib4.35 | 8ib4.36 | 8ib4.37 | 8ib4.38 | 8ib4.39 | 8ib4.40 | 8ib4.41 | 8ib4.42 | 8ib5.1 | 8ib6.1 | 8ib9.4 | 8ib9.10 | 8ib9.11 | 8ib9.12 | 8ib9.13 | 8ib9.14 | 8ib9.15 | 8ib9.20 | 8ib9.21 | 8ib9.24 | 8ib9.25 | 8ib9.29 | 8ib9.30 | 8ib9.31 | 8ib9.32 | 8ib9.33 | 8ib9.34 | 8ib9.35 | 8ib9.36 | 8ib9.37 | 8ib9.38 | 8ib9.39 | 8ib9.40 | 8ib9.41 | 8ib9.42 | 8iba.1 | 8ibb.1 | 8ibd.4 | 8ibd.11 | 8ibd.12 | 8ibd.13 | 8ibd.14 | 8ibd.15 | 8ibd.20 | 8ibd.21 | 8ibd.24 | 8ibd.25 | 8ibd.29 | 8ibd.30 | 8ibd.31 | 8ibd.32 | 8ibd.33 | 8ibd.34 | 8ibd.35 | 8ibd.36 | 8ibd.37 | 8ibd.38 | 8ibd.39 | 8ibd.40 | 8ibd.41 | 8ibd.42 | 8ibe.1 | 8ibf.1 | 8ic2.4 | 8ic2.10 | 8ic2.11 | 8ic2.12 | 8ic2.13 | 8ic2.14 | 8ic2.15 | 8ic2.20 | 8ic2.21 | 8ic2.24 | 8ic2.25 | 8ic2.29 | 8ic2.30 | 8ic2.31 | 8ic2.32 | 8ic2.33 | 8ic2.34 | 8ic2.35 | 8ic2.36 | 8ic2.37 | 8ic2.38 | 8ic2.39 | 8ic2.40 | 8ic2.41 | 8ic2.42 | 8ic3.1 | 8ic4.1 | 8olt.1 | 8om1.1 | 8pw5.38 | 8pw5.47 | 8pw5.55 | 8pw5.56 | 8pw5.57 | 8pw5.58 | 8pw5.59 | 8pw5.60 | 8pw5.61 | 8pw5.62 | 8pw5.67 | 8pw5.68 | 8pw5.69 | 8pw5.70 | 8pw5.71 | 8pw5.72 | 8pw5.73 | 8pw5.74 | 8pw5.75 | 8pw5.76 | 8pw5.77 | 8pw5.78 | 8pw5.79 | 8pw5.80 | 8pw6.37 | 8pw6.46 | 8pw6.54 | 8pw6.55 | 8pw6.56 | 8pw6.57 | 8pw6.58 | 8pw6.59 | 8pw6.60 | 8pw6.61 | 8pw6.66 | 8pw6.67 | 8pw6.68 | 8pw6.69 | 8pw6.70 | 8pw6.71 | 8pw6.72 | 8pw6.73 | 8pw6.74 | 8pw6.75 | 8pw6.76 | 8pw6.77 | 8pw6.78 | 8pw6.79 | 8pw7.37 | 8pw7.46 | 8pw7.54 | 8pw7.55 | 8pw7.56 | 8pw7.57 | 8pw7.58 | 8pw7.59 | 8pw7.60 | 8pw7.61 | 8pw7.66 | 8pw7.67 | 8pw7.68 | 8pw7.69 | 8pw7.70 | 8pw7.71 | 8pw7.72 | 8pw7.73 | 8pw7.74 | 8pw7.75 | 8pw7.76 | 8pw7.77 | 8pw7.78 | 8pw7.79 | 8rgp.1 | 8rgq.1 | 8rgr.1 | 8rgt.1