SMTL ID : 8olt.1

Mitochondrial complex I from Mus musculus in the active state bound with piericidin A

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-2-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-mer

Ligands

16 x LMT: DODECYL-BETA-D-MALTOSIDE(Non-covalent)

LMT.1: 10 residues within 4Å: Chain A: T.107, Q.108, K.109 Chain N: I.4, A.7 Chain O: L.40, I.44, K.48, W.289 Ligands: 3PE.35 Ligand excluded by PLIP LMT.3: 13 residues within 4Å: Chain 1: I.30, P.33, M.34, T.39, K.40, S.43 Chain A: T.84, S.85, M.88, F.92, I.93, T.96 Chain H: I.309 Ligand excluded by PLIP LMT.19: 9 residues within 4Å: Chain 4: E.84 Chain J: N.2, N.3, F.6, V.7, L.11, L.117, D.118, L.120 Ligand excluded by PLIP LMT.20: 11 residues within 4Å: Chain 4: I.12, S.13, L.14, H.17, E.24 Chain A: K.83 Chain J: S.146, C.147, T.149, W.150 Chain N: L.15 Ligand excluded by PLIP LMT.21: 12 residues within 4Å: Chain J: L.17, A.20, L.21, N.85, L.87, L.94, G.95 Chain K: L.17, M.21, F.22, R.23 Chain L: K.585 Ligand excluded by PLIP LMT.22: 12 residues within 4Å: Chain L: I.562, K.564, S.567 Chain M: N.144, I.147, Y.148, Y.152, I.155, V.212 Chain N: F.291 Ligands: 3PE.24, LMT.25 Ligand excluded by PLIP LMT.25: 13 residues within 4Å: Chain D: Q.46, Y.53 Chain L: T.566, S.567, H.570, T.571 Chain M: I.155 Chain N: M.284, M.285, L.288, F.291 Ligands: LMT.22, 3PE.24 Ligand excluded by PLIP LMT.27: 17 residues within 4Å: Chain M: N.88, V.90, L.91, M.98, I.127, P.128, I.131, R.135 Chain N: W.234, P.238, L.241, T.242, S.245, L.246, S.301 Chain O: Y.328, N.329 Ligand excluded by PLIP LMT.34: 8 residues within 4Å: Chain N: Y.10, F.14, K.47, H.125, M.220 Chain O: E.303 Ligands: 3PE.31, 3PE.35 Ligand excluded by PLIP LMT.37: 10 residues within 4Å: Chain A: Q.26, M.27 Chain P: R.212, H.216, N.219, Y.220, F.223, F.305, W.313, T.314 Ligand excluded by PLIP LMT.42: 14 residues within 4Å: Chain L: L.553, W.557, L.558, K.560 Chain Y: S.109, Y.110, G.111, A.114 Ligands: 3PE.24 Chain c: P.82, G.90, A.91, G.94, F.95 Ligand excluded by PLIP LMT.43: 10 residues within 4Å: Chain M: I.162, L.166, S.191, L.195, A.198 Chain N: L.276, T.280 Chain Y: E.133, G.134, W.135 Ligand excluded by PLIP LMT.44: 10 residues within 4Å: Chain Y: K.5, F.8, E.9, Y.11, H.12, F.72, M.120, A.124, F.127, K.131 Ligand excluded by PLIP LMT.45: 4 residues within 4Å: Chain Y: G.104, H.108, S.109, Y.110 Ligand excluded by PLIP LMT.51: 5 residues within 4Å: Chain 7: I.93, I.117, W.120, R.123 Chain f: N.59 Ligand excluded by PLIP LMT.53: 8 residues within 4Å: Chain 9: V.55, E.59, F.60, S.63, L.64, F.67 Chain a: W.79, A.83 Ligand excluded by PLIP

3 x PC1: 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE(Non-covalent)

PC1.2: 10 residues within 4Å: Chain A: V.20, W.23, L.24, P.25, Q.26 Chain P: F.305, S.308, F.310, W.313 Ligands: PC1.6 8 PLIP interactions: 4 interactions with chain P, 4 interactions with chain A Hydrophobic interactions: P:W.313, A:V.20, A:W.23, A:W.23, A:L.24 Hydrogen bonds: P:S.308, P:W.313 pi-Cation interactions: P:F.310 PC1.5: 15 residues within 4Å: Chain B: K.77, D.80, L.81, W.84, R.87, K.213 Chain H: I.39, L.46, F.49, M.53 Chain g: F.28, R.29, N.31, W.75, D.76 11 PLIP interactions: 8 interactions with chain B, 2 interactions with chain H, 1 interactions with chain g Hydrophobic interactions: B:D.80, B:W.84, B:W.84, B:W.84, H:L.46, H:F.49 Salt bridges: B:R.87, B:R.87, B:K.213, B:K.213 Hydrogen bonds: g:D.76 PC1.6: 11 residues within 4Å: Chain A: L.24, Q.26 Chain B: I.82, R.86, L.218, W.221, R.224 Chain P: D.90, F.310, E.311 Ligands: PC1.2 8 PLIP interactions: 3 interactions with chain B, 3 interactions with chain P, 2 interactions with chain A Hydrophobic interactions: B:L.218, P:F.310, A:L.24, A:L.24 Hydrogen bonds: B:R.86 Salt bridges: B:R.224, P:D.90, P:E.311

6 x SF4: IRON/SULFUR CLUSTER(Non-covalent)

SF4.4: 13 residues within 4Å: Chain B: A.98, C.99, C.100, G.135, G.162, S.163, C.164, G.193, C.194, P.195 Chain D: R.118, R.138, H.223 4 PLIP interactions: 4 interactions with chain B, Metal complexes: B:C.99, B:C.100, B:C.164, B:C.194 SF4.9: 13 residues within 4Å: Chain F: I.205, P.223, S.378, C.379, G.380, Q.381, C.382, C.385, T.423, I.424, C.425, L.427, G.428 4 PLIP interactions: 4 interactions with chain F, Metal complexes: F:C.379, F:C.382, F:C.385, F:C.425 SF4.11: 12 residues within 4Å: Chain D: M.375, I.379 Chain G: H.124, P.125, D.127, C.128, C.131, G.134, C.137, Q.140, V.228, G.229 5 PLIP interactions: 5 interactions with chain G, Salt bridges: G:D.127 Metal complexes: G:H.124, G:C.128, G:C.131, G:C.137 SF4.12: 14 residues within 4Å: Chain G: M.173, C.176, I.177, Q.178, C.179, T.180, R.181, C.182, V.206, C.226, P.227, V.228, A.230, L.231 4 PLIP interactions: 4 interactions with chain G, Metal complexes: G:C.176, G:C.179, G:C.182, G:C.226 SF4.16: 12 residues within 4Å: Chain I: H.101, C.123, P.124, I.128, C.152, I.153, Y.154, C.155, G.156, F.157, C.158, E.169 5 PLIP interactions: 5 interactions with chain I, Salt bridges: I:E.169 Metal complexes: I:C.123, I:C.152, I:C.155, I:C.158 SF4.17: 13 residues within 4Å: Chain I: C.113, I.114, A.115, C.116, K.117, L.118, C.119, I.130, Y.145, C.162, V.164, A.166, I.167 4 PLIP interactions: 4 interactions with chain I, Metal complexes: I:C.113, I:C.116, I:C.119, I:C.162

1 x HQH: Piericidin A(Non-covalent)

HQH.7: 17 residues within 4Å: Chain B: T.94, F.95, G.96, L.97, A.98, M.104, M.105, A.108, F.121 Chain D: H.92, Y.141, T.189, L.192, F.200, F.201, I.456, V.457 3 PLIP interactions: 1 interactions with chain D, 2 interactions with chain B Hydrophobic interactions: D:L.192, B:T.94, B:A.108

2 x FES: FE2/S2 (INORGANIC) CLUSTER(Non-covalent)

FES.8: 9 residues within 4Å: Chain E: C.134, T.136, P.138, C.139, C.175, L.176, G.177, A.178, C.179 4 PLIP interactions: 4 interactions with chain E, Metal complexes: E:C.134, E:C.139, E:C.175, E:C.179 FES.13: 9 residues within 4Å: Chain G: R.62, C.64, Y.65, G.73, N.74, C.75, R.76, C.78, C.92 4 PLIP interactions: 4 interactions with chain G, Metal complexes: G:C.64, G:C.75, G:C.78, G:C.92

1 x FMN: FLAVIN MONONUCLEOTIDE(Non-covalent)

FMN.10: 20 residues within 4Å: Chain F: G.87, R.88, G.89, A.91, K.98, N.116, D.118, E.119, G.120, Y.204, I.205, G.207, E.208, E.209, V.242, A.243, N.244, T.247, A.426, L.427 17 PLIP interactions: 17 interactions with chain F Hydrophobic interactions: F:Y.204, F:Y.204, F:I.205, F:E.208, F:A.426, F:L.427 Hydrogen bonds: F:R.88, F:G.89, F:N.116, F:G.120, F:G.207, F:E.209, F:V.242, F:N.244, F:N.244, F:T.247 Salt bridges: F:K.98

1 x NA: SODIUM ION(Non-functional Binders)

NA.14: 5 residues within 4Å: Chain G: Q.133, I.223, C.226, V.228, L.231 2 PLIP interactions: 2 interactions with chain G Hydrogen bonds: G:Q.133, G:I.223

5 x CDL: CARDIOLIPIN(Non-covalent)

CDL.15: 13 residues within 4Å: Chain H: R.62, T.66, S.67, M.68, S.69 Chain J: Y.27, T.81, W.82, G.83, L.89 Chain P: W.222, R.286, T.358 9 PLIP interactions: 4 interactions with chain J, 1 interactions with chain P, 4 interactions with chain H Hydrophobic interactions: J:L.89 Hydrogen bonds: J:Y.27, J:T.81, J:G.83, H:T.66, H:M.68, H:S.69, H:S.69 Salt bridges: P:R.286 CDL.26: 19 residues within 4Å: Chain 7: L.68, M.71, K.72, L.75 Chain L: S.22, M.23, R.116, K.119, Y.120, L.123, T.127, I.142, M.150 Chain M: P.353, L.354, T.357, M.361, P.370, P.371 13 PLIP interactions: 7 interactions with chain L, 4 interactions with chain 7, 2 interactions with chain M Hydrophobic interactions: L:T.127, L:I.142, 7:L.68, 7:K.72, 7:L.75, M:P.371 Hydrogen bonds: L:R.116, L:Y.120, M:T.357 Salt bridges: L:K.119, L:K.119, L:K.119, 7:K.72 CDL.49: 13 residues within 4Å: Chain 5: F.20, C.24, R.28 Chain 6: F.99 Chain 7: N.124, F.125, D.127, K.131 Chain M: K.3, L.33, L.36, T.37, T.40 15 PLIP interactions: 5 interactions with chain M, 4 interactions with chain 5, 4 interactions with chain 7, 2 interactions with chain 6 Hydrophobic interactions: M:L.33, M:L.36, 5:F.20, 7:F.125, 6:F.99, 6:F.99 Salt bridges: M:K.3, M:K.3, M:K.3, 5:R.28, 5:R.28 Hydrogen bonds: 5:R.28, 7:D.127, 7:D.127, 7:K.131 CDL.50: 18 residues within 4Å: Chain 6: T.102, Y.106 Chain 7: V.82, I.86, T.87, N.90, E.95, H.115 Chain 8: W.80, F.81, Y.84, H.89 Ligands: 3PE.28, 3PE.52 Chain f: P.44, V.48, R.49, I.52 13 PLIP interactions: 5 interactions with chain 7, 3 interactions with chain 8, 2 interactions with chain 6, 3 interactions with chain f Hydrophobic interactions: 7:V.82, 7:I.86, 7:T.87, 8:W.80, 8:F.81, 6:T.102, f:P.44, f:V.48 Hydrogen bonds: 7:N.90, 6:Y.106, f:R.49 Salt bridges: 7:H.115, 8:H.89 CDL.55: 21 residues within 4Å: Chain 0: W.2, F.3, L.6, P.7, A.10 Chain H: P.42, Y.43, I.45 Ligands: 3PE.56 Chain g: L.3, V.6, R.9, G.10, Q.13, L.23, F.27, I.33 Chain h: S.3, A.4, T.5, I.8 12 PLIP interactions: 4 interactions with chain g, 4 interactions with chain 0, 3 interactions with chain H, 1 interactions with chain h Hydrophobic interactions: g:L.3, g:L.23, 0:F.3, 0:L.6, 0:L.6, 0:A.10, H:P.42, H:P.42, H:I.45 Hydrogen bonds: g:Q.13, h:T.5 Salt bridges: g:R.9

14 x 3PE: 1,2-Distearoyl-sn-glycerophosphoethanolamine(Non-covalent)(Covalent)

3PE.18: 22 residues within 4Å: Chain 1: V.18, V.25 Chain D: R.266, N.270 Chain H: W.179, P.180, M.183, I.187, I.273, Y.277, L.288, N.292, F.293, L.296 Chain I: I.60, L.61, W.63, L.66, L.70 Chain Z: I.40, L.43 Ligands: 3PE.46 12 PLIP interactions: 6 interactions with chain H, 2 interactions with chain D, 2 interactions with chain I, 1 interactions with chain 1, 1 interactions with chain Z Hydrophobic interactions: H:W.179, H:P.180, H:I.187, H:Y.277, I:W.63, I:L.70, 1:V.25, Z:I.40 Hydrogen bonds: H:N.292, H:N.292 Salt bridges: D:R.266, D:R.266 3PE.23: 14 residues within 4Å: Chain L: T.166, Q.170, L.173, Y.174, I.177, G.228, F.529, I.533, H.534, T.537, P.538, S.541 Chain b: N.115, R.116 9 PLIP interactions: 9 interactions with chain L Hydrophobic interactions: L:L.173, L:I.177, L:F.529, L:I.533, L:T.537, L:P.538 Hydrogen bonds: L:Q.170 Salt bridges: L:H.534, L:H.534 3PE.24: 16 residues within 4Å: Chain L: K.560, T.561, S.565, T.566, T.568, N.572 Chain Y: S.109, G.111, T.112, A.114, M.115, V.118, M.120 Ligands: LMT.22, LMT.25, LMT.42 8 PLIP interactions: 2 interactions with chain L, 6 interactions with chain Y Hydrophobic interactions: L:T.566, Y:T.112, Y:A.114, Y:M.115, Y:V.118 Hydrogen bonds: L:N.572, Y:S.109, Y:S.109 3PE.28: 17 residues within 4Å: Chain 6: T.101, V.104, A.105 Chain L: H.67 Chain M: L.39, P.64, I.67, L.68, W.71, P.443, L.446, L.447, T.449, S.450, K.452, I.454 Ligands: CDL.50 13 PLIP interactions: 11 interactions with chain M, 1 interactions with chain 6, 1 interactions with chain L Hydrophobic interactions: M:L.39, M:I.67, M:L.68, M:W.71, M:W.71, M:P.443, M:L.446, M:L.447, M:I.454, 6:T.101 Hydrogen bonds: M:S.450, L:H.67 Salt bridges: M:K.452 3PE.29: 10 residues within 4Å: Chain 5: H.10, H.13 Chain 6: W.83, F.91 Chain M: K.22, T.25, N.26, S.29, Y.30, L.33 8 PLIP interactions: 5 interactions with chain M, 2 interactions with chain 6, 1 interactions with chain 5 Hydrophobic interactions: M:T.25, M:Y.30, M:L.33, 6:F.91, 6:F.91 Salt bridges: M:K.22, M:K.22, 5:H.10 3PE.30: 10 residues within 4Å: Chain L: L.576 Chain N: T.160 Chain Y: I.37, G.38, Y.41, S.42, L.45, N.46, R.57, Y.61 10 PLIP interactions: 9 interactions with chain Y, 1 interactions with chain N Hydrophobic interactions: Y:I.37, Y:Y.41, Y:Y.41, Y:Y.41, Y:L.45, N:T.160 Hydrogen bonds: Y:S.42, Y:N.46, Y:Y.61, Y:Y.61 3PE.31: 12 residues within 4Å: Chain N: H.125, L.128, I.129, T.132, W.133, I.209, M.217, M.220, N.323, L.329 Ligands: LMT.34, 3PE.35 6 PLIP interactions: 6 interactions with chain N Hydrophobic interactions: N:L.128, N:I.129, N:W.133, N:I.209, N:L.329 Hydrogen bonds: N:N.323 3PE.35: 7 residues within 4Å: Chain N: Y.10 Chain O: G.39, L.40, L.41 Ligands: LMT.1, 3PE.31, LMT.34 6 PLIP interactions: 4 interactions with chain O, 2 interactions with chain N Hydrophobic interactions: O:L.40, O:L.41, N:Y.10, N:Y.10 Hydrogen bonds: O:L.40, O:L.41 3PE.41: 15 residues within 4Å: Chain 3: P.29, R.30, Y.33 Chain 5: K.33 Chain M: L.12, M.55, S.101, L.105, M.108 Chain N: P.338 Chain X: F.169, W.170, T.171, V.172 Ligands: 3PE.48 7 PLIP interactions: 2 interactions with chain M, 1 interactions with chain X, 1 interactions with chain N, 1 interactions with chain 5, 2 interactions with chain 3 Hydrophobic interactions: M:L.12, M:L.105, X:F.169, N:P.338, 3:P.29, 3:Y.33 Hydrogen bonds: 5:K.33 3PE.46: 14 residues within 4Å: Chain H: M.183 Chain I: M.62, T.64, E.65, I.67, R.68, G.71 Chain Z: R.28, G.29, L.30, M.35 Ligands: 3PE.18 Chain h: W.14, A.15 4 PLIP interactions: 2 interactions with chain Z, 1 interactions with chain I, 1 interactions with chain h Hydrogen bonds: Z:L.30, I:T.64 Salt bridges: Z:R.28 Hydrophobic interactions: h:W.14 3PE.47: 23 residues within 4Å: Chain 0: A.39 Chain A: M.1, L.3, Y.4, I.7, F.8, I.11 Chain H: L.77, L.81, N.97, L.98, N.99, F.104, T.108 Chain J: F.37, L.41, L.44, L.53 Chain Z: F.140, T.141, W.142, Y.143, T.144 12 PLIP interactions: 2 interactions with chain J, 5 interactions with chain A, 4 interactions with chain H, 1 interactions with chain Z Hydrophobic interactions: J:F.37, J:F.37, A:Y.4, A:I.7, A:I.7, A:F.8, A:I.11, H:L.77, H:L.81, H:F.104 Hydrogen bonds: H:N.99, Z:Y.143 3PE.48: 13 residues within 4Å: Chain 3: K.25, N.27, P.29 Chain 5: F.22, L.26, K.29, D.30 Chain M: L.2, L.9, M.55, F.56, M.108 Ligands: 3PE.41 9 PLIP interactions: 1 interactions with chain 3, 5 interactions with chain 5, 3 interactions with chain M Salt bridges: 3:K.25, 5:K.29, 5:K.33 Hydrophobic interactions: 5:F.22, 5:L.26, M:L.2, M:L.9, M:F.56 Hydrogen bonds: 5:D.30 3PE.52: 7 residues within 4Å: Chain 8: F.81, Y.85, H.89, K.93 Chain L: T.65, W.66 Ligands: CDL.50 10 PLIP interactions: 6 interactions with chain 8, 4 interactions with chain L Hydrophobic interactions: 8:F.81, 8:Y.85, 8:Y.85, L:T.65, L:W.66, L:W.66, L:W.66 Salt bridges: 8:H.89, 8:H.89, 8:K.93 3PE.56: 11 residues within 4Å: Chain 0: W.2, L.9 Chain H: S.268, W.272 Chain I: L.74, F.78 Ligands: CDL.55 Chain h: V.7, K.10, L.11, W.14 11 PLIP interactions: 4 interactions with chain h, 3 interactions with chain 0, 2 interactions with chain H, 2 interactions with chain I Hydrophobic interactions: h:V.7, h:L.11, h:W.14, 0:W.2, 0:W.2, 0:L.9, H:W.272, H:W.272, I:L.74, I:F.78 Hydrogen bonds: h:K.10

1 x MG: MAGNESIUM ION(Non-functional Binders)

MG.32: 1 residues within 4Å: Ligands: GTP.33 No protein-ligand interaction detected (PLIP)

1 x GTP: GUANOSINE-5'-TRIPHOSPHATE(Non-covalent)

GTP.33: 21 residues within 4Å: Chain O: I.66, C.67, S.68, G.69, K.70, N.71, E.88, L.114, F.117, Y.118, Q.132, L.135, R.139, R.161, D.166, F.169, M.173, K.221, E.226, Y.233 Ligands: MG.32 22 PLIP interactions: 22 interactions with chain O Hydrogen bonds: O:C.67, O:S.68, O:G.69, O:K.70, O:N.71, O:N.71, O:N.71, O:N.71, O:Y.118, O:Q.132, O:Q.132, O:Q.132, O:R.139, O:E.226, O:Y.233 Salt bridges: O:K.70, O:K.70, O:K.70, O:R.161, O:K.221 pi-Stacking: O:F.169, O:F.169

1 x NDP: NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NDP.36: 26 residues within 4Å: Chain B: R.224 Chain P: G.60, T.62, G.63, F.64, L.65, R.85, C.86, W.108, A.110, L.129, I.130, G.131, R.132, F.139, V.144, F.145, I.148, V.167, S.168, H.169, K.184, P.203, S.204, I.206, R.212 26 PLIP interactions: 25 interactions with chain P, 1 interactions with chain B Hydrophobic interactions: P:I.206, P:I.206 Hydrogen bonds: P:G.60, P:T.62, P:T.62, P:T.62, P:F.64, P:L.65, P:C.86, P:L.129, P:G.131, P:K.184, P:I.206, P:I.206 Water bridges: P:G.63, P:G.66, P:R.85, P:N.128 Salt bridges: P:R.85, P:R.132, P:R.132, P:R.212, P:R.212, B:R.224 pi-Cation interactions: P:R.85, P:R.85

1 x ZN: ZINC ION(Non-covalent)

ZN.38: 5 residues within 4Å: Chain R: C.79, G.81, H.88, C.104, C.107 4 PLIP interactions: 4 interactions with chain R Metal complexes: R:C.79, R:H.88, R:C.104, R:C.107

2 x EHZ: ~{S}-[2-[3-[[(2~{R})-3,3-dimethyl-2-oxidanyl-4-phosphonooxy-butanoyl]amino]propanoylamino]ethyl] (3~{S})-3-oxidanyltetradecanethioate(Covalent)

EHZ.39: 20 residues within 4Å: Chain T: D.111, S.112, L.113 Chain W: K.32, V.35, L.38, W.42, V.46, K.65, V.66, M.69, F.70, M.71, N.73, A.74, V.76, L.85, G.89, V.106, F.109 15 PLIP interactions: 2 interactions with chain T, 13 interactions with chain W Hydrophobic interactions: T:L.113, W:W.42, W:W.42, W:W.42, W:V.46, W:K.65, W:M.69, W:F.70, W:V.106, W:F.109 Hydrogen bonds: T:S.112, W:K.32, W:N.73, W:A.74 Salt bridges: W:K.32 EHZ.40: 18 residues within 4Å: Chain U: D.111, S.112 Chain d: H.12, V.16, A.23, H.26, L.27, W.30, M.44, R.47, F.48, H.51, K.52, E.54, A.60, A.67, F.71, N.74 7 PLIP interactions: 1 interactions with chain U, 6 interactions with chain d Hydrogen bonds: U:S.112, d:K.52 Hydrophobic interactions: d:A.23, d:H.26, d:L.27, d:A.60 Salt bridges: d:K.52

1 x MYR: MYRISTIC ACID(Covalent)

MYR.54: 8 residues within 4Å: Chain L: N.400, L.409, L.413, T.489, I.492 Chain b: Q.154 Chain e: G.2, L.5 4 PLIP interactions: 1 interactions with chain e, 3 interactions with chain L Hydrophobic interactions: e:L.5, L:L.409, L:L.413, L:I.492

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Grba, D.N. et al., Investigation of hydrated channels and proton pathways in a high-resolution cryo-EM structure of mammalian complex I. Sci Adv (2023)

Release Date

2023-08-09

Peptides

NADH-ubiquinone oxidoreductase chain 3: A
NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial: B
NADH dehydrogenase [ubiquinone] iron-sulfur protein 3, mitochondrial: C
NADH dehydrogenase [ubiquinone] iron-sulfur protein 2, mitochondrial: D
NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial: E
NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial: F
NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial: G
NADH-ubiquinone oxidoreductase chain 1: H
NADH dehydrogenase [ubiquinone] iron-sulfur protein 8, mitochondrial: I
NADH-ubiquinone oxidoreductase chain 6: J
NADH-ubiquinone oxidoreductase chain 4L: K
NADH-ubiquinone oxidoreductase chain 5: L
NADH-ubiquinone oxidoreductase chain 4: M
NADH-ubiquinone oxidoreductase chain 2: N
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 10, mitochondrial: O
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial: P
NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial: Q
NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial: R
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2: S
Acyl carrier protein, mitochondrial: TU
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5: V
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6: W
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8: X
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 11: Y
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13: Z
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 1: 0
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 3: 1
NADH dehydrogenase [ubiquinone] 1 subunit C1, mitochondrial: 2
NADH dehydrogenase [ubiquinone] 1 subunit C2: 3
NADH dehydrogenase [ubiquinone] iron-sulfur protein 5: 4
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 1: 5
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 11, mitochondrial: 6
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 5, mitochondrial: 7
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 6: 8
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2, mitochondrial: 9
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 3: a
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8, mitochondrial: b
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 4: c
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9: d
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7, METHYLGLYOXAL BIS-(GUANYLHYDRAZONE), NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7: e
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10: f
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12: g
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 7: h
NADH dehydrogenase [ubiquinone] flavoprotein 3, mitochondrial: i

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

H
H

I
I

J
J

K
K

L
L

M
M

N
N

O
O

P
P

Q
Q

R
R

S
S

T
T

U
U

V
V

W
W

X
X

Y
Y

Z
Z

0
a

1
b

2
c

3
d

4
e

5
f

6
g

7
h

8
i

9
j

a
k

b
l

c
m

d
n

e
o

f
p

g
q

h
r

i
s

Membrane

We predict this structure to be a membrane protein.
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NADH-ubiquinone oxidoreductase chain 3

NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial

NADH dehydrogenase [ubiquinone] iron-sulfur protein 3, mitochondrial

NADH dehydrogenase [ubiquinone] iron-sulfur protein 2, mitochondrial

NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial

NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial

NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial

NADH-ubiquinone oxidoreductase chain 1

NADH dehydrogenase [ubiquinone] iron-sulfur protein 8, mitochondrial

NADH-ubiquinone oxidoreductase chain 6

NADH-ubiquinone oxidoreductase chain 4L

NADH-ubiquinone oxidoreductase chain 5

NADH-ubiquinone oxidoreductase chain 4

NADH-ubiquinone oxidoreductase chain 2

NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 10, mitochondrial

NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial

NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial

NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial

NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2

Acyl carrier protein, mitochondrial

NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5

NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6

NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8

NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 11

NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13

NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 1

NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 3

NADH dehydrogenase [ubiquinone] 1 subunit C1, mitochondrial

NADH dehydrogenase [ubiquinone] 1 subunit C2

NADH dehydrogenase [ubiquinone] iron-sulfur protein 5

NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 1

NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 11, mitochondrial

NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 5, mitochondrial

NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 6

NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2, mitochondrial

NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 3

NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8, mitochondrial

NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 4

NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9

NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7, METHYLGLYOXAL BIS-(GUANYLHYDRAZONE), NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7

NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10

NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12

NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 7

NADH dehydrogenase [ubiquinone] flavoprotein 3, mitochondrial

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