SMTL ID : 8om1.1

Mitochondrial complex I from Mus musculus in the active state

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-2-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-mer

Ligands

16 x LMT: DODECYL-BETA-D-MALTOSIDE(Non-covalent)

LMT.1: 12 residues within 4Å: Chain A: Q.26, M.27, N.28, L.29 Chain P: H.216, N.219, Y.220, F.223, P.227, F.305, E.311, W.313 Ligand excluded by PLIP LMT.2: 13 residues within 4Å: Chain 1: I.30, P.33, M.34, T.39, K.40, S.43 Chain A: T.84, S.85, M.88, F.92, I.93, T.96 Chain H: I.309 Ligand excluded by PLIP LMT.15: 2 residues within 4Å: Chain H: Y.248, N.250 Ligand excluded by PLIP LMT.20: 12 residues within 4Å: Chain 4: I.12, S.13, L.14, H.17, E.24 Chain 7: F.178 Chain J: S.146, C.147, A.148, T.149, W.150 Chain N: L.15 Ligand excluded by PLIP LMT.21: 10 residues within 4Å: Chain 4: E.84 Chain J: N.2, N.3, F.6, S.10, L.11, L.117, D.118, L.120 Chain Z: K.130 Ligand excluded by PLIP LMT.23: 13 residues within 4Å: Chain L: W.557, L.558, K.560 Chain Y: S.108, Y.109, G.110, A.113 Ligands: 3PE.28 Chain c: P.82, S.87, G.90, A.91, G.94 Ligand excluded by PLIP LMT.26: 16 residues within 4Å: Chain D: Q.46, M.52, Y.53 Chain L: T.566, S.567, T.568, H.570, T.571 Chain M: F.151, I.155 Chain N: M.284, L.288, F.291, R.295 Ligands: LMT.27, 3PE.28 Ligand excluded by PLIP LMT.27: 14 residues within 4Å: Chain L: P.563, K.564, S.567 Chain M: N.144, I.147, Y.148, Y.152, I.155, I.205, V.212 Chain N: F.291 Ligands: LMT.26, 3PE.28 Chain c: Y.77 Ligand excluded by PLIP LMT.31: 15 residues within 4Å: Chain M: N.88, V.90, L.91, I.131, R.135 Chain N: W.234, P.238, L.241, T.242, S.245, L.246, S.301 Chain O: Y.328, N.329 Ligands: 3PE.43 Ligand excluded by PLIP LMT.32: 7 residues within 4Å: Chain N: L.6, Y.10, F.14, H.125 Chain O: Y.293 Ligands: 3PE.34, 3PE.38 Ligand excluded by PLIP LMT.35: 9 residues within 4Å: Chain A: T.107 Chain N: P.3, I.4, L.6, A.7 Chain O: L.40, I.44, W.289 Ligands: 3PE.38 Ligand excluded by PLIP LMT.44: 13 residues within 4Å: Chain Y: F.7, E.8, Y.10, H.11, I.25, L.29, I.67, F.71, M.119, A.122, A.123, F.126, K.130 Ligand excluded by PLIP LMT.45: 13 residues within 4Å: Chain M: P.159, I.162, L.166, S.191, L.194, L.195, A.198 Chain N: N.274, T.280 Chain Y: E.132, G.133, W.134, E.135 Ligand excluded by PLIP LMT.47: 6 residues within 4Å: Chain Y: L.100, G.103, A.104, H.107, S.108, Y.109 Ligand excluded by PLIP LMT.54: 7 residues within 4Å: Chain 6: F.103 Chain 7: I.117, W.120, I.121, R.123 Chain f: R.60, T.61 Ligand excluded by PLIP LMT.56: 8 residues within 4Å: Chain 9: R.52, I.56, E.59, F.60, S.63, F.67 Chain a: W.79, A.83 Ligand excluded by PLIP

5 x PC1: 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE(Non-covalent)

PC1.3: 10 residues within 4Å: Chain A: L.19, V.20, W.23, L.24, P.25, Q.26 Chain P: S.308, F.310, W.313 Ligands: PC1.6 6 PLIP interactions: 4 interactions with chain P, 2 interactions with chain A Hydrophobic interactions: P:W.313, A:V.20, A:W.23 Water bridges: P:S.308, P:E.311 pi-Cation interactions: P:F.310 PC1.5: 14 residues within 4Å: Chain B: V.74, K.77, L.81, W.84, R.87, K.213 Chain H: I.39, L.46, M.53 Chain I: F.88 Chain g: F.28, R.29, N.31, W.75 13 PLIP interactions: 13 interactions with chain B Hydrophobic interactions: B:V.74, B:K.77, B:L.81, B:L.81, B:W.84, B:W.84, B:W.84 Water bridges: B:R.87, B:R.87, B:S.88 Salt bridges: B:R.87, B:K.213, B:K.213 PC1.6: 12 residues within 4Å: Chain A: L.24, Q.26 Chain B: A.71, I.82, L.218, W.221, R.224 Chain H: F.56 Chain P: D.90, F.310, E.311 Ligands: PC1.3 20 PLIP interactions: 9 interactions with chain B, 4 interactions with chain H, 3 interactions with chain P, 4 interactions with chain A Hydrophobic interactions: B:A.71, B:L.218, B:W.221, B:W.221, B:W.221, H:F.56, H:F.56, H:F.56, H:F.56, P:F.310, A:L.24, A:L.24 Water bridges: B:W.221, B:R.224, B:R.224, A:Q.26, A:Q.26 Salt bridges: B:R.224, P:D.90, P:E.311 PC1.29: 12 residues within 4Å: Chain L: S.541, L.544, T.548, S.549 Chain M: W.267, M.271, S.274, I.402 Ligands: 3PE.24 Chain c: L.89, A.93, P.97 3 PLIP interactions: 2 interactions with chain L, 1 interactions with chain M Hydrophobic interactions: L:L.544, M:I.402 Hydrogen bonds: L:S.549 PC1.58: 6 residues within 4Å: Chain 7: T.87 Chain 8: F.80 Ligands: CDL.52 Chain f: V.48, F.51, R.54 5 PLIP interactions: 4 interactions with chain f, 1 interactions with chain 7 Hydrophobic interactions: f:V.48, f:F.51, f:F.51, 7:T.87 Salt bridges: f:R.54

6 x SF4: IRON/SULFUR CLUSTER(Non-covalent)

SF4.4: 13 residues within 4Å: Chain B: A.98, C.99, C.100, G.135, T.136, G.162, S.163, C.164, C.194, P.195 Chain D: R.118, R.138, H.223 4 PLIP interactions: 4 interactions with chain B, Metal complexes: B:C.99, B:C.100, B:C.164, B:C.194 SF4.8: 13 residues within 4Å: Chain F: I.205, P.223, S.378, C.379, G.380, Q.381, C.382, C.385, T.423, I.424, C.425, L.427, G.428 4 PLIP interactions: 4 interactions with chain F, Metal complexes: F:C.379, F:C.382, F:C.385, F:C.425 SF4.10: 13 residues within 4Å: Chain D: I.379 Chain G: H.124, P.125, D.127, C.128, C.131, Q.133, G.134, C.137, L.139, Q.140, V.228, G.229 5 PLIP interactions: 5 interactions with chain G, Salt bridges: G:D.127 Metal complexes: G:H.124, G:C.128, G:C.131, G:C.137 SF4.11: 14 residues within 4Å: Chain G: M.173, C.176, I.177, Q.178, C.179, T.180, R.181, C.182, V.206, C.226, P.227, V.228, A.230, L.231 4 PLIP interactions: 4 interactions with chain G, Metal complexes: G:C.176, G:C.179, G:C.182, G:C.226 SF4.16: 14 residues within 4Å: Chain I: C.113, I.114, A.115, C.116, K.117, L.118, C.119, I.130, Y.145, C.162, P.163, V.164, A.166, I.167 4 PLIP interactions: 4 interactions with chain I, Metal complexes: I:C.113, I:C.116, I:C.119, I:C.162 SF4.17: 13 residues within 4Å: Chain I: H.101, C.123, P.124, A.125, I.128, C.152, I.153, Y.154, C.155, G.156, F.157, C.158, E.169 5 PLIP interactions: 5 interactions with chain I, Salt bridges: I:E.169 Metal complexes: I:C.123, I:C.152, I:C.155, I:C.158

2 x FES: FE2/S2 (INORGANIC) CLUSTER(Non-covalent)

FES.7: 10 residues within 4Å: Chain E: C.134, T.136, P.138, C.139, C.175, L.176, G.177, A.178, C.179, M.184 4 PLIP interactions: 4 interactions with chain E, Metal complexes: E:C.134, E:C.139, E:C.175, E:C.179 FES.12: 10 residues within 4Å: Chain G: R.62, F.63, C.64, Y.65, G.73, N.74, C.75, R.76, C.78, C.92 4 PLIP interactions: 4 interactions with chain G, Metal complexes: G:C.64, G:C.75, G:C.78, G:C.92

1 x FMN: FLAVIN MONONUCLEOTIDE(Non-covalent)

FMN.9: 19 residues within 4Å: Chain F: G.87, R.88, G.89, K.98, N.116, D.118, E.119, G.120, Y.204, I.205, G.207, E.208, E.209, V.242, A.243, N.244, T.247, A.426, L.427 26 PLIP interactions: 26 interactions with chain F Hydrophobic interactions: F:Y.204, F:Y.204, F:I.205, F:E.208, F:E.208, F:A.426, F:L.427 Hydrogen bonds: F:R.88, F:G.89, F:N.116, F:E.119, F:G.120, F:G.207, F:E.209, F:N.244, F:N.244, F:T.247 Water bridges: F:G.90, F:A.91, F:F.93, F:K.98, F:D.118, F:E.121, F:D.127, F:T.247 Salt bridges: F:K.98

1 x NA: SODIUM ION(Non-functional Binders)

NA.13: 5 residues within 4Å: Chain G: Q.133, I.223, C.226, V.228, L.231 2 PLIP interactions: 2 interactions with chain G Hydrogen bonds: G:Q.133, G:I.223

6 x CDL: CARDIOLIPIN(Non-covalent)

CDL.14: 17 residues within 4Å: Chain H: T.66, S.67, M.68, S.69, I.72, I.73 Chain J: V.14, G.15, Y.27, L.30, V.34, T.81, W.82, G.83 Chain P: W.222, R.286, T.358 17 PLIP interactions: 6 interactions with chain H, 8 interactions with chain J, 3 interactions with chain P Hydrophobic interactions: H:I.73, J:L.30, J:V.34, J:W.82, J:W.82, J:W.82 Hydrogen bonds: H:S.67, H:M.68, H:S.69, J:T.81, J:W.82, J:G.83 Water bridges: H:S.67, P:R.221, P:R.286 Salt bridges: H:R.62, P:R.286 CDL.22: 17 residues within 4Å: Chain J: L.17, A.20, L.21, K.22, L.87, F.91, L.94, G.95, M.98 Chain K: L.17, M.21, F.22, R.23 Chain L: K.585, L.592, I.593, I.596 15 PLIP interactions: 4 interactions with chain L, 2 interactions with chain K, 9 interactions with chain J Hydrophobic interactions: L:L.592, L:I.593, L:I.596, K:L.17, J:L.17, J:A.20, J:L.21, J:L.87, J:F.91, J:F.91, J:F.91, J:L.94 Salt bridges: L:K.585, K:R.23, J:K.22 CDL.25: 16 residues within 4Å: Chain 7: L.68, K.72, L.75 Chain L: S.22, M.23, R.116, K.119, Y.120, L.123, I.142, M.150 Chain M: P.353, L.354, T.357, W.358, P.371 16 PLIP interactions: 6 interactions with chain M, 3 interactions with chain 7, 7 interactions with chain L Hydrophobic interactions: M:L.354, M:W.358, M:P.371, 7:K.72, 7:L.75, L:I.142 Hydrogen bonds: M:T.357, M:T.357, L:R.116, L:Y.120 Water bridges: M:L.354, L:K.28 Salt bridges: 7:K.72, L:K.119, L:K.119, L:K.119 CDL.52: 21 residues within 4Å: Chain 6: V.98, T.102, A.105, Y.106 Chain 7: I.86, T.87, N.90, E.95, H.115 Chain 8: W.79, F.80, Y.83, H.88 Chain L: W.66 Ligands: 3PE.30, 3PE.55, PC1.58 Chain f: L.47, V.48, R.49, I.52 18 PLIP interactions: 5 interactions with chain 6, 4 interactions with chain 7, 7 interactions with chain 8, 2 interactions with chain f Hydrophobic interactions: 6:V.98, 6:V.98, 6:A.105, 6:Y.106, 7:I.86, 8:W.79, 8:W.79, 8:W.79, 8:F.80, 8:Y.83, 8:Y.83, f:L.47 Hydrogen bonds: 6:Y.106, 7:N.90, 7:E.95, f:R.49 Salt bridges: 7:H.115, 8:H.88 CDL.53: 18 residues within 4Å: Chain 5: F.20, C.24, R.28 Chain 6: F.90, F.91, I.95, F.99, F.103 Chain 7: W.120, N.124, F.125, Y.126, D.127 Chain M: K.3, L.36, T.37, T.40 Ligands: 3PE.51 15 PLIP interactions: 2 interactions with chain 5, 7 interactions with chain 6, 4 interactions with chain 7, 2 interactions with chain M Hydrophobic interactions: 5:F.20, 6:F.91, 6:F.91, 6:I.95, 6:F.99, 6:F.103, 6:F.103, 6:F.103, 7:W.120, 7:F.125, 7:F.125 Hydrogen bonds: 5:R.28, 7:D.127, M:T.40 Salt bridges: M:K.3 CDL.59: 16 residues within 4Å: Chain 0: M.1, W.2, F.3, L.6, P.7 Chain H: Y.43 Ligands: 3PE.60 Chain g: L.3, V.6, R.9, G.10, Q.13 Chain h: S.2, A.3, T.4, I.7 11 PLIP interactions: 6 interactions with chain g, 2 interactions with chain h, 3 interactions with chain 0 Hydrophobic interactions: g:L.3, 0:W.2, 0:L.6, 0:P.7 Hydrogen bonds: g:R.9, g:Q.13, h:T.4 Water bridges: g:Q.54, g:Q.54, h:R.11 Salt bridges: g:R.9

16 x 3PE: 1,2-Distearoyl-sn-glycerophosphoethanolamine(Non-covalent)

3PE.18: 12 residues within 4Å: Chain H: W.272 Chain I: M.62, T.64, I.67, R.68, G.71 Chain Z: R.28, G.29, L.30, M.35 Ligands: 3PE.19 Chain h: W.13 Ligand excluded by PLIP 3PE.19: 23 residues within 4Å: Chain 1: V.18, V.21, V.25 Chain D: R.266 Chain H: W.179, M.184, F.186, I.187, L.190, P.197, I.273, Y.277, L.288, N.292, F.293, L.296 Chain I: I.60, L.61, W.63, L.66 Chain Z: I.40, L.43 Ligands: 3PE.18 Ligand excluded by PLIP 3PE.24: 18 residues within 4Å: Chain L: T.166, Q.170, L.173, Y.174, I.177, G.228, I.533, H.534, P.538, S.541, L.542 Chain M: L.277, I.401, I.402, M.405 Ligands: PC1.29 Chain b: N.115, R.116 Ligand excluded by PLIP 3PE.28: 17 residues within 4Å: Chain L: K.560, T.561, S.565, T.566, T.568, N.572 Chain Y: S.108, G.110, T.111, M.114, G.115, V.117, Y.118, A.122 Ligands: LMT.23, LMT.26, LMT.27 Ligand excluded by PLIP 3PE.30: 19 residues within 4Å: Chain 6: G.100, T.101, V.104, A.105 Chain L: W.66, H.67, W.68 Chain M: P.64, I.67, L.68, W.71, P.443, L.446, L.447, T.449, S.450, K.452, I.454 Ligands: CDL.52 Ligand excluded by PLIP 3PE.33: 18 residues within 4Å: Chain 3: N.3, R.30, L.31, M.34, G.72, Y.75, L.76, R.78 Chain N: S.199, L.202, L.203, M.206, I.210, M.332, T.336, L.339, Q.342, L.343 Ligand excluded by PLIP 3PE.34: 12 residues within 4Å: Chain N: H.125, L.128, I.129, T.132, W.133, M.206, M.217, K.321, N.323, L.329 Ligands: LMT.32, 3PE.38 Ligand excluded by PLIP 3PE.38: 9 residues within 4Å: Chain N: A.7, Y.10 Chain O: G.39, L.40, L.41, M.296 Ligands: LMT.32, 3PE.34, LMT.35 Ligand excluded by PLIP 3PE.43: 14 residues within 4Å: Chain 3: P.29, R.30, Y.33 Chain 5: K.33 Chain M: M.55 Chain N: P.256, L.337, P.338 Chain X: F.169, W.170, T.171, V.172 Ligands: LMT.31, 3PE.49 Ligand excluded by PLIP 3PE.46: 17 residues within 4Å: Chain L: L.576, T.577, Q.580 Chain N: P.110, F.113, I.153, M.156, L.157, T.160 Chain Y: I.36, G.37, Y.40, S.41, L.44, N.45, R.56, Y.60 Ligand excluded by PLIP 3PE.48: 21 residues within 4Å: Chain 0: A.39 Chain A: M.1, L.3, Y.4, I.7, F.8, I.11 Chain H: L.81, L.98, N.99, F.104, T.108 Chain J: F.37, L.41, L.44, L.53 Chain Z: F.140, T.141, W.142, Y.143, T.144 Ligand excluded by PLIP 3PE.49: 13 residues within 4Å: Chain 3: K.25, N.27, P.29, V.32, L.36 Chain 5: F.22, L.26, K.29, D.30, K.33 Chain M: L.9, M.10 Ligands: 3PE.43 Ligand excluded by PLIP 3PE.50: 12 residues within 4Å: Chain 2: N.40, A.43, L.46, S.47 Chain 3: M.34, H.59, R.60, L.63, F.64, S.67, F.68 Chain N: L.324 Ligand excluded by PLIP 3PE.51: 12 residues within 4Å: Chain 5: H.10, H.13, I.14, P.17 Chain 6: V.79, W.83, F.91 Chain M: K.22, T.25, S.29, Y.30 Ligands: CDL.53 Ligand excluded by PLIP 3PE.55: 6 residues within 4Å: Chain 8: F.80, Y.84, H.88 Chain L: W.66, M.78 Ligands: CDL.52 Ligand excluded by PLIP 3PE.60: 11 residues within 4Å: Chain 0: W.2 Chain H: S.268, W.272 Chain I: L.74, L.77, F.78 Ligands: CDL.59 Chain h: V.6, K.9, L.10, W.13 Ligand excluded by PLIP

1 x MG: MAGNESIUM ION(Non-covalent)

MG.36: 2 residues within 4Å: Chain O: E.88 Ligands: DGT.37 No protein-ligand interaction detected (PLIP)

1 x DGT: 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE(Non-covalent)

DGT.37: 22 residues within 4Å: Chain O: I.66, C.67, S.68, G.69, K.70, N.71, E.88, L.114, F.117, Y.118, L.131, Q.132, L.135, R.139, R.161, D.166, F.169, M.173, K.221, E.226, Y.233 Ligands: MG.36 24 PLIP interactions: 24 interactions with chain O Hydrophobic interactions: O:I.66 Hydrogen bonds: O:C.67, O:S.68, O:G.69, O:K.70, O:N.71, O:Y.118, O:Q.132, O:Q.132, O:Q.132, O:R.139, O:E.226, O:Y.233 Water bridges: O:K.70, O:K.70, O:R.139 Salt bridges: O:K.70, O:K.70, O:K.70, O:R.161, O:K.221, O:K.221 pi-Stacking: O:F.169, O:F.169

1 x NDP: NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NDP.39: 26 residues within 4Å: Chain B: R.224 Chain P: G.60, T.62, G.63, F.64, L.65, R.85, C.86, W.108, A.110, L.129, I.130, G.131, R.132, F.139, V.144, F.145, V.167, S.168, H.169, K.184, P.203, S.204, D.205, I.206, R.212 41 PLIP interactions: 38 interactions with chain P, 3 interactions with chain B Hydrophobic interactions: P:P.203, P:I.206 Hydrogen bonds: P:G.60, P:T.62, P:T.62, P:T.62, P:F.64, P:L.65, P:R.85, P:R.85, P:C.86, P:L.129, P:G.131, P:K.184, P:I.206, P:I.206, P:R.212 Water bridges: P:G.63, P:G.66, P:R.85, P:R.85, P:A.110, P:R.132, P:R.132, P:R.132, P:R.132, P:E.133, P:E.133, P:E.133, P:T.136, P:D.205, P:R.321, B:R.224, B:R.224 Salt bridges: P:R.85, P:R.132, P:R.132, P:R.212, P:R.212, B:R.224 pi-Cation interactions: P:R.85

1 x ZN: ZINC ION(Non-covalent)

ZN.40: 5 residues within 4Å: Chain R: C.79, G.81, H.88, C.104, C.107 4 PLIP interactions: 4 interactions with chain R Metal complexes: R:C.79, R:H.88, R:C.104, R:C.107

2 x EHZ: ~{S}-[2-[3-[[(2~{R})-3,3-dimethyl-2-oxidanyl-4-phosphonooxy-butanoyl]amino]propanoylamino]ethyl] (3~{S})-3-oxidanyltetradecanethioate(Covalent)

EHZ.41: 16 residues within 4Å: Chain T: S.112 Chain W: K.32, V.35, R.36, L.38, W.42, K.65, V.66, F.70, M.71, N.73, A.74, V.76, L.85, V.86, F.109 14 PLIP interactions: 13 interactions with chain W, 1 interactions with chain T Hydrophobic interactions: W:W.42, W:W.42, W:K.65, W:V.66, W:F.70, W:F.109, W:F.109 Hydrogen bonds: W:K.32, W:R.36, W:N.73, W:A.74, W:A.74, T:S.112 Salt bridges: W:K.32 EHZ.42: 20 residues within 4Å: Chain U: S.112, L.113 Chain d: H.12, Q.13, V.16, A.23, L.27, W.30, M.44, R.47, F.48, H.51, K.52, E.54, A.60, L.63, A.67, E.70, F.71, N.74 14 PLIP interactions: 12 interactions with chain d, 2 interactions with chain U Hydrophobic interactions: d:V.16, d:A.23, d:L.27, d:F.48, d:A.60, d:N.74, U:L.113 Hydrogen bonds: d:Q.13, d:R.47, d:H.51, d:K.52, d:K.52, U:S.112 Salt bridges: d:K.52

1 x MYR: MYRISTIC ACID(Covalent)

MYR.57: 9 residues within 4Å: Chain L: L.409, L.413, W.484, F.485, T.489 Chain b: S.152, Q.154 Chain e: G.1, L.4 6 PLIP interactions: 5 interactions with chain L, 1 interactions with chain e Hydrophobic interactions: L:L.409, L:L.413, L:W.484, L:F.485, L:T.489, e:L.4

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Grba, D.N. et al., Investigation of hydrated channels and proton pathways in a high-resolution cryo-EM structure of mammalian complex I. Sci Adv (2023)

Release Date

2023-08-09

Peptides

NADH-ubiquinone oxidoreductase chain 3: A
NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial: B
NADH dehydrogenase [ubiquinone] iron-sulfur protein 3, mitochondrial: C
NADH dehydrogenase [ubiquinone] iron-sulfur protein 2, mitochondrial: D
NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial: E
NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial: F
NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial: G
NADH-ubiquinone oxidoreductase chain 1: H
NADH dehydrogenase [ubiquinone] iron-sulfur protein 8, mitochondrial: I
NADH-ubiquinone oxidoreductase chain 6: J
NADH-ubiquinone oxidoreductase chain 4L: K
NADH-ubiquinone oxidoreductase chain 5: L
NADH-ubiquinone oxidoreductase chain 4: M
NADH-ubiquinone oxidoreductase chain 2: N
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 10, mitochondrial: O
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial: P
NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial: Q
NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial: R
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2: S
Acyl carrier protein, mitochondrial: TU
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5: V
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6: W
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8: X
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 11: Y
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13: Z
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 1: 0
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 3: 1
NADH dehydrogenase [ubiquinone] 1 subunit C1, mitochondrial: 2
NADH dehydrogenase [ubiquinone] 1 subunit C2: 3
NADH dehydrogenase [ubiquinone] iron-sulfur protein 5: 4
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 1: 5
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 11, mitochondrial: 6
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 5, mitochondrial: 7
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 6: 8
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2, mitochondrial: 9
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 3: a
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8, mitochondrial: b
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 4: c
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9: d
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7: e
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10: f
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12: g
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 7: h
NADH dehydrogenase [ubiquinone] flavoprotein 3, mitochondrial: i

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

H
H

I
I

J
J

K
K

L
L

M
M

N
N

O
O

P
P

Q
Q

R
R

S
S

T
T

U
U

V
V

W
W

X
X

Y
Y

Z
Z

0
a

1
b

2
c

3
d

4
e

5
f

6
g

7
h

8
i

9
j

a
k

b
l

c
m

d
n

e
o

f
p

g
q

h
r

i
s

Membrane

We predict this structure to be a membrane protein.
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NADH-ubiquinone oxidoreductase chain 3

NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial

NADH dehydrogenase [ubiquinone] iron-sulfur protein 3, mitochondrial

NADH dehydrogenase [ubiquinone] iron-sulfur protein 2, mitochondrial

NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial

NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial

NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial

NADH-ubiquinone oxidoreductase chain 1

NADH dehydrogenase [ubiquinone] iron-sulfur protein 8, mitochondrial

NADH-ubiquinone oxidoreductase chain 6

NADH-ubiquinone oxidoreductase chain 4L

NADH-ubiquinone oxidoreductase chain 5

NADH-ubiquinone oxidoreductase chain 4

NADH-ubiquinone oxidoreductase chain 2

NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 10, mitochondrial

NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial

NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial

NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial

NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2

Acyl carrier protein, mitochondrial

NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5

NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6

NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8

NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 11

NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13

NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 1

NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 3

NADH dehydrogenase [ubiquinone] 1 subunit C1, mitochondrial

NADH dehydrogenase [ubiquinone] 1 subunit C2

NADH dehydrogenase [ubiquinone] iron-sulfur protein 5

NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 1

NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 11, mitochondrial

NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 5, mitochondrial

NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 6

NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2, mitochondrial

NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 3

NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8, mitochondrial

NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 4

NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9

NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7

NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10

NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12

NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 7

NADH dehydrogenase [ubiquinone] flavoprotein 3, mitochondrial

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