SMTL ID : 6g2r.1 (1 other biounit)

Crystal structure of FimH in complex with a tetraflourinated biphenyl alpha D-mannoside

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

monomer

Ligands

1 x EJK: 4-[3-chloranyl-4-[(2~{R},3~{S},4~{S},5~{S},6~{R})-6-(hydroxymethyl)-3,4,5-tris(oxidanyl)oxan-2-yl]oxy-phenyl]-2,3,5,6-tetrakis(fluoranyl)benzenecarbonitrile(Non-covalent)

EJK.1: 15 residues within 4Å: Chain A: F.1, I.13, G.14, N.46, D.47, Y.48, I.52, D.54, Q.133, N.135, Y.137, N.138, D.140, F.142 Ligands: EPE.3 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:Y.48, A:I.52 Hydrogen bonds: A:F.1, A:N.46, A:D.47, A:Q.133, A:Q.133, A:N.135, A:D.140 pi-Stacking: A:Y.48 Halogen bonds: A:Y.137, A:N.138

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 2 residues within 4Å: Chain A: P.91, R.92 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.92 Water bridges: A:R.92 Salt bridges: A:R.92

1 x EPE: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID(Non-functional Binders)

EPE.3: 5 residues within 4Å: Chain A: I.13, D.47, Y.48, R.98 Ligands: EJK.1 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.98

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Schonemann, W. et al., Improvement of Aglycone pi-Stacking Yields Nanomolar to Sub-nanomolar FimH Antagonists. Chemmedchem (2019)

Release Date

2019-03-20

Peptides

Type 1 fimbrin D-mannose specific adhesin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Type 1 fimbrin D-mannose specific adhesin

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