SMTL ID : 6g2s.2 (8 other biounits)

Crystal structure of FimH in complex with a pentaflourinated biphenyl alpha D-mannoside

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

monomer

Ligands

1 x EJN: (2~{R},3~{S},4~{S},5~{S},6~{R})-2-(hydroxymethyl)-6-[4-[2,3,4,5,6-pentakis(fluoranyl)phenyl]phenoxy]oxane-3,4,5-triol(Non-covalent)

EJN.1: 15 residues within 4Å: Chain A: F.1, I.13, G.14, N.46, D.47, Y.48, T.51, I.52, D.54, Q.133, N.135, Y.137, N.138, D.140, F.142 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:Y.48, A:I.52 Hydrogen bonds: A:F.1, A:N.46, A:D.47, A:D.54, A:Q.133, A:N.135, A:D.140 Water bridges: A:F.1 pi-Stacking: A:Y.48

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 5 residues within 4Å: Chain A: R.60, S.62, Y.64, V.128, I.130 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.62, A:Y.64, A:Y.64 Salt bridges: A:R.60 SO4.3: 2 residues within 4Å: Chain A: P.91, R.92 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.92 Salt bridges: A:R.92

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Schonemann, W. et al., Improvement of Aglycone pi-Stacking Yields Nanomolar to Sub-nanomolar FimH Antagonists. Chemmedchem (2019)

Release Date

2019-03-20

Peptides

Type 1 fimbrin D-mannose specific adhesin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Type 1 fimbrin D-mannose specific adhesin

Related Entries With Identical Sequence