SMTL ID : 6gt3.1

Crystal Structure of the A2A-StaR2-bRIL562 in complex with AZD4635 at 2.0A resolution

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

1 x NA: SODIUM ION(Non-functional Binders)

NA.1: 3 residues within 4Å: Chain A: D.61, S.100, N.385 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.61, A:S.100, A:N.385

1 x F9Q: 6-(2-chloranyl-6-methyl-pyridin-4-yl)-5-(4-fluorophenyl)-1,2,4-triazin-3-amine(Non-covalent)

F9Q.2: 15 residues within 4Å: Chain A: A.72, I.75, V.93, L.94, F.177, E.178, M.186, N.190, W.351, L.354, H.355, N.358, M.375, I.379, H.383 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:A.72, A:I.75, A:L.94, A:F.177, A:F.177, A:W.351, A:L.354, A:L.354, A:I.379 Hydrogen bonds: A:N.358, A:N.358 Salt bridges: A:E.178 pi-Stacking: A:F.177

3 x CLR: CHOLESTEROL(Non-covalent)

CLR.3: 8 residues within 4Å: Chain A: F.71, A.81, A.82, G.85, F.88, I.89 Ligands: OLC.28, OLC.29 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:F.71, A:A.81, A:F.88, A:I.89 Hydrogen bonds: A:A.82 Water bridges: A:Q.172, A:Q.172 CLR.4: 9 residues within 4Å: Chain A: L.349, L.352, P.353, I.357, C.367, S.368, A.370, L.374 Ligands: OLA.7 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:L.349, A:L.352, A:P.353, A:I.357, A:L.374 Hydrogen bonds: A:S.368 CLR.5: 7 residues within 4Å: Chain A: L.196, C.359, F.360, F.363, C.364 Ligands: OLA.20, OLC.23 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:L.196, A:F.360, A:F.360, A:F.360, A:F.363

15 x OLA: OLEIC ACID(Non-covalent)(Non-functional Binders)

OLA.6: 7 residues within 4Å: Chain A: P.70, T.74, T.77, F.79 Ligands: OLA.13, OLC.26, OLC.28 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:P.70, A:T.74, A:T.77 Hydrogen bonds: A:T.77 OLA.7: 3 residues within 4Å: Chain A: W.373, L.377 Ligands: CLR.4 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:W.373, A:L.377 OLA.8: 4 residues within 4Å: Chain A: I.342, G.345, L.346 Ligands: OLA.20 No protein-ligand interaction detected (PLIP) OLA.9: 6 residues within 4Å: Chain A: F.53, A.106, I.109, D.110, V.125, I.133 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:A.106, A:I.109, A:I.133 OLA.10: 4 residues within 4Å: Chain A: I.25, T.384, V.388, F.391 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:I.25, A:T.384, A:V.388 OLA.11: 7 residues within 4Å: Chain A: G.14, V.17, V.21, W.373, Y.376, V.380 Ligands: OLA.15 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:V.17, A:V.21, A:W.373, A:Y.376, A:Y.376, A:V.380 Water bridges: A:W.373 OLA.12: 3 residues within 4Å: Chain A: I.136 Ligands: OLA.17, OLC.22 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:I.136 OLA.13: 3 residues within 4Å: Ligands: OLA.6, OLA.18, OLC.26 No protein-ligand interaction detected (PLIP) OLA.14: 7 residues within 4Å: Chain A: L.28, L.31, G.32, L.35, W.38, V.387, F.391 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:L.35, A:V.387, A:F.391, A:F.391 OLA.15: 2 residues within 4Å: Chain A: W.373 Ligands: OLA.11 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:W.373, A:W.373 OLA.16: 5 residues within 4Å: Chain A: I.12, S.16, I.19, T.20 Ligands: OLA.18 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:T.20 OLA.17: 4 residues within 4Å: Chain A: R.129, G.132, V.139 Ligands: OLA.12 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:V.139 OLA.18: 7 residues within 4Å: Chain A: I.12, S.15, I.19, L.23, T.77 Ligands: OLA.13, OLA.16 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:I.19, A:L.23, A:T.77 Hydrogen bonds: A:S.15 OLA.19: 5 residues within 4Å: Chain A: V.34, C.37, W.38, W.41 Ligands: OLC.30 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:V.34, A:W.41 Hydrogen bonds: A:W.41 OLA.20: 8 residues within 4Å: Chain A: L.199, L.203, Y.206, A.341, A.344, G.345 Ligands: CLR.5, OLA.8 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:L.203

10 x OLC: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate(Non-covalent)(Non-functional Binders)

OLC.21: 5 residues within 4Å: Chain A: Y.188, F.192, L.200, F.363 Ligands: OLC.23 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:L.200 Hydrogen bonds: A:Y.188 OLC.22: 8 residues within 4Å: Chain A: H.84, A.143, M.149, L.150, G.151, N.153 Ligands: OLA.12, OLC.27 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:A.143, A:L.150 Hydrogen bonds: A:N.153, A:N.153 Salt bridges: A:H.84 OLC.23: 4 residues within 4Å: Chain A: L.196, F.363 Ligands: CLR.5, OLC.21 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:L.196, A:F.363 Water bridges: A:F.363 OLC.24: 2 residues within 4Å: Ligands: OLC.29, OLC.30 No protein-ligand interaction detected (PLIP) OLC.25: 5 residues within 4Å: Chain A: A.82, C.83, H.84, G.85, G.171 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:H.84 Hydrogen bonds: A:C.83, A:H.84, A:G.85 Water bridges: A:E.170, A:G.171 OLC.26: 3 residues within 4Å: Ligands: OLA.6, OLA.13, OLC.28 No protein-ligand interaction detected (PLIP) OLC.27: 7 residues within 4Å: Chain A: W.138, F.142, A.143, L.146, M.149 Ligands: OLC.22, OLC.29 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:W.138, A:F.142, A:F.142, A:F.142, A:L.146 Water bridges: A:M.149 OLC.28: 11 residues within 4Å: Chain A: V.66, L.67, P.70, F.71, T.74, F.79, C.80, Q.172 Ligands: CLR.3, OLA.6, OLC.26 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:L.67, A:P.70, A:F.71, A:T.74, A:F.79, A:F.79 Hydrogen bonds: A:C.80, A:Q.172 Water bridges: A:C.80 OLC.29: 12 residues within 4Å: Chain A: Y.52, A.59, L.63, L.67, F.92, G.127, I.134, W.138 Ligands: CLR.3, OLC.24, OLC.27, OLC.30 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:A.59, A:L.63, A:L.67, A:F.92, A:W.138 Hydrogen bonds: A:G.127 OLC.30: 9 residues within 4Å: Chain A: C.37, W.41, Y.52, V.55, A.59, L.63 Ligands: OLA.19, OLC.24, OLC.29 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:V.55, A:A.59, A:L.63 Hydrogen bonds: A:Y.52

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Borodovsky, A. et al., Small molecule AZD4635 inhibitor of A2AR signaling rescues immune cell function including CD103+ dendritic cells enhancing anti-tumor immunity. J Immunother Cancer (2020)

Release Date

2019-06-26

Peptides

Adenosine receptor A2a,Soluble cytochrome b562,Adenosine receptor A2a: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Membrane

We predict this structure to be a membrane protein.
Show / Hide

Adenosine receptor A2a,Soluble cytochrome b562,Adenosine receptor A2a

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