SMTL ID : 6guh.1

CDK2 in complex with AZD5438

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

monomer

Ligands

1 x FB8: 4-(2-methyl-3-propan-2-yl-imidazol-4-yl)-~{N}-(4-methylsulfonylphenyl)pyrimidin-2-amine(Non-covalent)

FB8.1: 17 residues within 4Å: Chain A: I.18, V.26, A.39, K.41, V.72, F.88, E.89, F.90, L.91, H.92, Q.93, D.94, K.97, Q.139, N.140, L.142, D.153 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:I.18, A:V.26, A:A.39, A:V.72, A:L.142, A:L.142, A:D.153 Hydrogen bonds: A:L.91, A:L.91 Water bridges: A:D.153

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 7 residues within 4Å: Chain A: Q.93, K.97, F.98, A.101, H.303, L.304, R.305 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.93, A:K.97, A:H.303 EDO.3: 3 residues within 4Å: Chain A: E.265, R.268, S.269 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.265, A:R.268, A:S.269

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wood, D.J. et al., Differences in the Conformational Energy Landscape of CDK1 and CDK2 Suggest a Mechanism for Achieving Selective CDK Inhibition. Cell Chem Biol (2019)

Release Date

2018-12-05

Peptides

Cyclin-dependent kinase 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Cyclin-dependent kinase 2

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