- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.90 Å
- Oligo State
- hetero-3-3-mer
- Ligands
- 3 x J7T: molybdate cluster(Non-covalent)
- 3 x J7N: 2,2,4-tris(oxidanyl)-1,3-dioxa-2$l^{4},4$l^{3}-dimolybdacyclobutane(Non-covalent)
J7N.2: 6 residues within 4Å:- Chain A: G.129, L.130, F.179
- Chain B: H.156
- Ligands: J7T.1, J7Q.5
1 PLIP interactions:1 interactions with chain E- Hydrogen bonds: E:Q.115
J7N.12: 6 residues within 4Å:- Chain C: G.129, L.130, F.179
- Chain D: H.156
- Ligands: J7T.11, J7Q.15
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:Q.115
J7N.22: 6 residues within 4Å:- Chain E: G.129, L.130, F.179
- Chain F: H.156
- Ligands: J7T.21, J7Q.25
1 PLIP interactions:1 interactions with chain C- Hydrogen bonds: C:Q.115
- 3 x J8E: oxidanyl-[[2,2,4,4,4-pentakis($l^{1}-oxidanyl)-1-(oxidanylmolybdenio)-1$l^{3},3-dioxa-2$l^{5},4$l^{5}-dimolybdacyclobut-2-yl]oxy]molybdenum(Non-covalent)
J8E.3: 12 residues within 4Å:- Chain A: P.123, V.125, V.133, P.134
- Chain C: L.130, S.131, A.132, V.133, P.134
- Chain E: V.133
- Ligands: J8E.13, J8E.23
4 PLIP interactions:3 interactions with chain C, 1 interactions with chain A- Hydrogen bonds: C:L.130, C:A.132, C:V.133
- Water bridges: A:S.131
J8E.13: 12 residues within 4Å:- Chain A: V.133
- Chain C: P.123, V.125, V.133, P.134
- Chain E: L.130, S.131, A.132, V.133, P.134
- Ligands: J8E.3, J8E.23
5 PLIP interactions:5 interactions with chain E- Hydrogen bonds: E:L.130, E:A.132, E:V.133
- Water bridges: E:G.127, E:S.131
J8E.23: 12 residues within 4Å:- Chain A: L.130, S.131, A.132, V.133, P.134
- Chain C: V.133
- Chain E: P.123, V.125, V.133, P.134
- Ligands: J8E.3, J8E.13
6 PLIP interactions:5 interactions with chain A, 1 interactions with chain E- Hydrogen bonds: A:L.130, A:A.132, A:V.133
- Water bridges: A:G.127, A:S.131, E:S.131
- 3 x FUQ: Mo5 Cluster(Non-covalent)
FUQ.4: 15 residues within 4Å:- Chain A: K.41, G.43, G.44, Q.45, S.46, G.76, A.77, G.78, R.82, R.167, T.168, D.169, K.188, I.224, E.226
16 PLIP interactions:16 interactions with chain A- Hydrogen bonds: A:K.41, A:K.41, A:G.44, A:Q.45, A:S.46, A:S.46, A:A.77, A:A.77, A:G.78, A:R.82, A:R.167, A:T.168, A:T.168, A:T.168, A:K.188, A:I.224
FUQ.14: 15 residues within 4Å:- Chain C: K.41, G.43, G.44, Q.45, S.46, G.76, A.77, G.78, R.82, R.167, T.168, D.169, K.188, I.224, E.226
16 PLIP interactions:16 interactions with chain C- Hydrogen bonds: C:K.41, C:K.41, C:G.44, C:Q.45, C:S.46, C:S.46, C:A.77, C:A.77, C:G.78, C:R.82, C:R.167, C:T.168, C:T.168, C:T.168, C:K.188, C:I.224
FUQ.24: 15 residues within 4Å:- Chain E: K.41, G.43, G.44, Q.45, S.46, G.76, A.77, G.78, R.82, R.167, T.168, D.169, K.188, I.224, E.226
16 PLIP interactions:16 interactions with chain E- Hydrogen bonds: E:K.41, E:K.41, E:G.44, E:Q.45, E:S.46, E:S.46, E:A.77, E:A.77, E:G.78, E:R.82, E:R.167, E:T.168, E:T.168, E:T.168, E:K.188, E:I.224
- 3 x J7Q: tetrakis($l^{1}-oxidanyl)-[[2,2,2,4,4,4,4,6,6,6,8-undecakis($l^{1}-oxidanyl)-8-(oxidanylmolybdeniooxy)-6-[tris($l^{1}-oxidanyl)molybdeniooxy]-1,3,5,7-tetraoxa-2$l^{6},4$l^{6},6$l^{6},8$l^{4}-tetramolybdacyclooct-2-yl]oxy]molybdenum(Non-covalent)
J7Q.5: 10 residues within 4Å:- Chain B: P.102, L.103, H.156
- Chain E: D.107, Q.108, A.111
- Ligands: J7T.1, J7N.2, J8B.8, J7T.21
6 PLIP interactions:1 interactions with chain B, 5 interactions with chain E- Water bridges: B:P.102
- Hydrogen bonds: E:D.107, E:D.107, E:D.107, E:D.107, E:D.107
J7Q.15: 10 residues within 4Å:- Chain A: D.107, Q.108, A.111
- Chain D: P.102, L.103, H.156
- Ligands: J7T.1, J7T.11, J7N.12, J8B.18
6 PLIP interactions:5 interactions with chain A, 1 interactions with chain D- Hydrogen bonds: A:D.107, A:D.107, A:D.107, A:D.107, A:D.107
- Water bridges: D:P.102
J7Q.25: 10 residues within 4Å:- Chain C: D.107, Q.108, A.111
- Chain F: P.102, L.103, H.156
- Ligands: J7T.11, J7T.21, J7N.22, J8B.28
6 PLIP interactions:5 interactions with chain C, 1 interactions with chain F- Hydrogen bonds: C:D.107, C:D.107, C:D.107, C:D.107, C:D.107
- Water bridges: F:P.102
- 3 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)
ATP.6: 22 residues within 4Å:- Chain B: K.44, G.46, G.47, R.48, G.78, A.79, G.80, R.84, E.189, N.190, V.191, G.193, I.194, Y.195, A.197, D.198, P.199, N.200, P.224, L.225, P.226
- Ligands: MG.7
20 PLIP interactions:19 interactions with chain B, 1 interactions with chain A- Hydrogen bonds: B:G.47, B:R.48, B:A.79, B:G.80, B:R.84, B:N.190, B:N.190, B:Y.195, B:Y.195, B:N.200, B:N.200
- Water bridges: B:K.44, B:K.44, B:K.44, B:K.44, B:D.170, B:D.170, A:S.15
- Salt bridges: B:K.44, B:K.44
ATP.16: 22 residues within 4Å:- Chain D: K.44, G.46, G.47, R.48, G.78, A.79, G.80, R.84, E.189, N.190, V.191, G.193, I.194, Y.195, A.197, D.198, P.199, N.200, P.224, L.225, P.226
- Ligands: MG.17
20 PLIP interactions:19 interactions with chain D, 1 interactions with chain C- Hydrogen bonds: D:G.47, D:R.48, D:A.79, D:G.80, D:R.84, D:N.190, D:N.190, D:Y.195, D:Y.195, D:N.200, D:N.200
- Water bridges: D:K.44, D:K.44, D:K.44, D:K.44, D:D.170, D:D.170, C:S.15
- Salt bridges: D:K.44, D:K.44
ATP.26: 22 residues within 4Å:- Chain F: K.44, G.46, G.47, R.48, G.78, A.79, G.80, R.84, E.189, N.190, V.191, G.193, I.194, Y.195, A.197, D.198, P.199, N.200, P.224, L.225, P.226
- Ligands: MG.27
20 PLIP interactions:1 interactions with chain E, 19 interactions with chain F- Water bridges: E:S.15, F:K.44, F:K.44, F:K.44, F:K.44, F:D.170, F:D.170
- Hydrogen bonds: F:G.47, F:R.48, F:A.79, F:G.80, F:R.84, F:N.190, F:N.190, F:Y.195, F:Y.195, F:N.200, F:N.200
- Salt bridges: F:K.44, F:K.44
- 3 x MG: MAGNESIUM ION(Non-covalent)
MG.7: 4 residues within 4Å:- Chain B: D.170, E.189, P.226
- Ligands: ATP.6
4 PLIP interactions:2 interactions with chain B, 2 Ligand-Water interactions- Metal complexes: B:E.189, B:P.226, H2O.5, H2O.6
MG.17: 4 residues within 4Å:- Chain D: D.170, E.189, P.226
- Ligands: ATP.16
4 PLIP interactions:2 interactions with chain D, 2 Ligand-Water interactions- Metal complexes: D:E.189, D:P.226, H2O.12, H2O.14
MG.27: 4 residues within 4Å:- Chain F: D.170, E.189, P.226
- Ligands: ATP.26
4 PLIP interactions:2 interactions with chain F, 2 Ligand-Water interactions- Metal complexes: F:E.189, F:P.226, H2O.20, H2O.21
- 3 x J8B: Molybdate cluster(Non-covalent)
J8B.8: 15 residues within 4Å:- Chain B: P.102, A.105, S.106, G.109, Q.110, H.113, Y.126, E.128, H.129, P.130, S.149, P.152, H.155
- Ligands: J7T.1, J7Q.5
9 PLIP interactions:9 interactions with chain B- Hydrogen bonds: B:A.105, B:A.105, B:Q.110, B:Y.126, B:H.129, B:H.129, B:H.129, B:S.149, B:H.155
J8B.18: 15 residues within 4Å:- Chain D: P.102, A.105, S.106, G.109, Q.110, H.113, Y.126, E.128, H.129, P.130, S.149, P.152, H.155
- Ligands: J7T.11, J7Q.15
9 PLIP interactions:9 interactions with chain D- Hydrogen bonds: D:A.105, D:A.105, D:Q.110, D:Y.126, D:H.129, D:H.129, D:H.129, D:S.149, D:H.155
J8B.28: 15 residues within 4Å:- Chain F: P.102, A.105, S.106, G.109, Q.110, H.113, Y.126, E.128, H.129, P.130, S.149, P.152, H.155
- Ligands: J7T.21, J7Q.25
9 PLIP interactions:9 interactions with chain F- Hydrogen bonds: F:A.105, F:A.105, F:Q.110, F:Y.126, F:H.129, F:H.129, F:H.129, F:S.149, F:H.155
- 3 x J85: [[[bis(oxidanylmolybdenio)-$l^{3}-oxidanyl]-$l^{1}-oxidanyl-oxidanylidene-molybdenio]-(oxidanylmolybdenio)-$l^{3}-oxidanyl]-tetrakis($l^{1}-oxidanyl)molybdenum(Non-covalent)
J85.9: 10 residues within 4Å:- Chain B: T.131, Q.135
- Chain D: E.128, P.130, T.131
- Ligands: MOO.10, J85.19, MOO.20, J85.29, MOO.30
6 PLIP interactions:4 interactions with chain D, 1 interactions with chain F, 1 interactions with chain B- Hydrogen bonds: D:E.128, D:T.131, D:T.131, B:T.131
- Water bridges: D:E.128, F:Q.135
J85.19: 10 residues within 4Å:- Chain D: T.131, Q.135
- Chain F: E.128, P.130, T.131
- Ligands: J85.9, MOO.10, MOO.20, J85.29, MOO.30
5 PLIP interactions:3 interactions with chain F, 1 interactions with chain D, 1 interactions with chain B- Hydrogen bonds: F:T.131, F:T.131, D:T.131
- Water bridges: F:E.128, B:Q.135
J85.29: 10 residues within 4Å:- Chain B: E.128, P.130, T.131
- Chain F: T.131, Q.135
- Ligands: J85.9, MOO.10, J85.19, MOO.20, MOO.30
8 PLIP interactions:2 interactions with chain F, 1 interactions with chain D, 5 interactions with chain B- Hydrogen bonds: F:T.131, F:Q.135, B:E.128, B:T.131, B:T.131, B:T.131
- Water bridges: D:Q.135, B:E.128
- 3 x MOO: MOLYBDATE ION(Non-covalent)
MOO.10: 11 residues within 4Å:- Chain B: T.131, Q.135, H.139
- Chain D: H.139
- Chain F: Q.135, H.139
- Ligands: J85.9, J85.19, MOO.20, J85.29, MOO.30
3 PLIP interactions:1 interactions with chain D, 2 interactions with chain F- Hydrogen bonds: D:H.139, F:Q.135, F:Q.135
MOO.20: 11 residues within 4Å:- Chain B: Q.135, H.139
- Chain D: T.131, Q.135, H.139
- Chain F: H.139
- Ligands: J85.9, MOO.10, J85.19, J85.29, MOO.30
3 PLIP interactions:1 interactions with chain F, 2 interactions with chain B- Hydrogen bonds: F:H.139, B:Q.135, B:Q.135
MOO.30: 11 residues within 4Å:- Chain B: H.139
- Chain D: Q.135, H.139
- Chain F: T.131, Q.135, H.139
- Ligands: J85.9, MOO.10, J85.19, MOO.20, J85.29
3 PLIP interactions:1 interactions with chain B, 2 interactions with chain D- Hydrogen bonds: B:H.139, D:Q.135, D:Q.135
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Brunle, S. et al., The molybdenum storage protein - A bionanolab for creating experimentally alterable polyoxomolybdate clusters. J. Inorg. Biochem. (2018)
- Release Date
- 2019-02-20
- Peptides
- Molybdenum storage protein subunit beta: ACE
Molybdenum storage protein subunit alpha: BDF - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
BC
BE
BB
AD
AF
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.90 Å
- Oligo State
- hetero-3-3-mer
- Ligands
- 3 x J7T: molybdate cluster(Non-covalent)
- 3 x J7N: 2,2,4-tris(oxidanyl)-1,3-dioxa-2$l^{4},4$l^{3}-dimolybdacyclobutane(Non-covalent)
- 3 x J8E: oxidanyl-[[2,2,4,4,4-pentakis($l^{1}-oxidanyl)-1-(oxidanylmolybdenio)-1$l^{3},3-dioxa-2$l^{5},4$l^{5}-dimolybdacyclobut-2-yl]oxy]molybdenum(Non-covalent)
- 3 x FUQ: Mo5 Cluster(Non-covalent)
- 3 x J7Q: tetrakis($l^{1}-oxidanyl)-[[2,2,2,4,4,4,4,6,6,6,8-undecakis($l^{1}-oxidanyl)-8-(oxidanylmolybdeniooxy)-6-[tris($l^{1}-oxidanyl)molybdeniooxy]-1,3,5,7-tetraoxa-2$l^{6},4$l^{6},6$l^{6},8$l^{4}-tetramolybdacyclooct-2-yl]oxy]molybdenum(Non-covalent)
- 3 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)
- 3 x MG: MAGNESIUM ION(Non-covalent)
- 3 x J8B: Molybdate cluster(Non-covalent)
- 3 x J85: [[[bis(oxidanylmolybdenio)-$l^{3}-oxidanyl]-$l^{1}-oxidanyl-oxidanylidene-molybdenio]-(oxidanylmolybdenio)-$l^{3}-oxidanyl]-tetrakis($l^{1}-oxidanyl)molybdenum(Non-covalent)
- 3 x MOO: MOLYBDATE ION(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Brunle, S. et al., The molybdenum storage protein - A bionanolab for creating experimentally alterable polyoxomolybdate clusters. J. Inorg. Biochem. (2018)
- Release Date
- 2019-02-20
- Peptides
- Molybdenum storage protein subunit beta: ACE
Molybdenum storage protein subunit alpha: BDF - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
BC
BE
BB
AD
AF
A