- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- hetero-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-mer
- Ligands
- 1 x UNK- UNK- UNK- UNK- UNK- UNK- UNK- UNK: Unknown protein(Non-covalent)
- 4 x ZN: ZINC ION(Non-covalent)
- 36 x MG: MAGNESIUM ION(Non-covalent)(Non-functional Binders)
MG.5: 3 residues within 4Å:- Chain U: D.405, N.429
- Chain a: A.91
No protein-ligand interaction detected (PLIP)MG.6: 3 residues within 4Å:- Chain N: H.12
- Chain T: F.3
- Chain W: H.39
2 PLIP interactions:1 interactions with chain W, 1 interactions with chain N- Metal complexes: W:H.39, N:H.12
MG.7: 3 residues within 4Å:- Chain 0: R.363
- Chain B: G.766
- Chain Q: M.67
No protein-ligand interaction detected (PLIP)MG.9: 1 residues within 4Å:- Chain 9: D.30
1 PLIP interactions:1 interactions with chain 9- Metal complexes: 9:D.30
MG.10: 1 residues within 4Å:- Chain a: A.27
No protein-ligand interaction detected (PLIP)MG.11: 2 residues within 4Å:- Chain a: U.65, A.131
No protein-ligand interaction detected (PLIP)MG.12: 3 residues within 4Å:- Chain a: U.65, U.66, A.133
No protein-ligand interaction detected (PLIP)MG.13: 3 residues within 4Å:- Chain a: A.60, A.61, A.155
No protein-ligand interaction detected (PLIP)MG.14: 3 residues within 4Å:- Chain a: A.68, A.93, U.94
No protein-ligand interaction detected (PLIP)MG.15: 2 residues within 4Å:- Chain a: U.69, A.91
No protein-ligand interaction detected (PLIP)MG.16: 4 residues within 4Å:- Chain a: G.141, U.142, U.143, G.147
No protein-ligand interaction detected (PLIP)MG.17: 3 residues within 4Å:- Chain a: U.231, G.232, U.246
No protein-ligand interaction detected (PLIP)MG.18: 2 residues within 4Å:- Chain a: C.237, U.251
No protein-ligand interaction detected (PLIP)MG.19: 3 residues within 4Å:- Chain a: U.338, U.339, A.355
No protein-ligand interaction detected (PLIP)MG.20: 2 residues within 4Å:- Chain a: A.571, A.572
No protein-ligand interaction detected (PLIP)MG.21: 2 residues within 4Å:- Chain a: U.562, U.563
No protein-ligand interaction detected (PLIP)MG.22: 1 residues within 4Å:- Chain a: A.603
No protein-ligand interaction detected (PLIP)MG.23: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)MG.24: 2 residues within 4Å:- Chain a: U.592, A.593
No protein-ligand interaction detected (PLIP)MG.25: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)MG.26: 3 residues within 4Å:- Chain a: A.280, U.281, A.367
No protein-ligand interaction detected (PLIP)MG.27: 2 residues within 4Å:- Ligands: MG.33
- Chain a: U.596
No protein-ligand interaction detected (PLIP)MG.28: 2 residues within 4Å:- Chain a: G.158, G.159
No protein-ligand interaction detected (PLIP)MG.29: 2 residues within 4Å:- Chain a: C.238, U.241
No protein-ligand interaction detected (PLIP)MG.30: 4 residues within 4Å:- Chain a: C.582, A.583, G.584, U.588
No protein-ligand interaction detected (PLIP)MG.31: 6 residues within 4Å:- Ligands: MG.32
- Chain a: G.584, A.587, U.588, A.590, A.591
No protein-ligand interaction detected (PLIP)MG.32: 5 residues within 4Å:- Ligands: MG.31
- Chain a: A.583, G.584, A.591, A.604
No protein-ligand interaction detected (PLIP)MG.33: 2 residues within 4Å:- Ligands: MG.27
- Chain a: A.604
No protein-ligand interaction detected (PLIP)MG.34: 3 residues within 4Å:- Chain a: A.222, A.224, A.225
No protein-ligand interaction detected (PLIP)MG.35: 3 residues within 4Å:- Chain a: G.229, A.248, U.250
No protein-ligand interaction detected (PLIP)MG.36: 2 residues within 4Å:- Chain 6: Q.11
- Chain a: A.33
No protein-ligand interaction detected (PLIP)MG.37: 4 residues within 4Å:- Chain 1: Y.9
- Chain a: G.542, A.586, U.613
No protein-ligand interaction detected (PLIP)MG.38: 2 residues within 4Å:- Chain a: A.386, U.387
No protein-ligand interaction detected (PLIP)MG.39: 2 residues within 4Å:- Chain a: A.385, U.544
No protein-ligand interaction detected (PLIP)MG.40: 3 residues within 4Å:- Chain 1: K.13
- Chain 4: D.68
- Chain a: A.541
No protein-ligand interaction detected (PLIP)MG.41: 3 residues within 4Å:- Chain 3: R.10
- Chain a: A.75, A.76
No protein-ligand interaction detected (PLIP)- 2 x SPD: SPERMIDINE(Non-covalent)
SPD.42: 11 residues within 4Å:- Chain 0: R.572, D.578, N.581
- Chain 6: Y.13, P.15
- Chain a: A.218, U.259, U.261, A.262, A.263, A.264
2 PLIP interactions:2 interactions with chain 0- Hydrogen bonds: 0:R.572, 0:N.581
SPD.43: 11 residues within 4Å:- Chain 6: D.10, T.12
- Chain T: F.2, G.71, G.72
- Chain a: A.27, U.28, G.239, A.266, U.267, U.268
2 PLIP interactions:1 interactions with chain 6, 1 interactions with chain T- Hydrogen bonds: 6:T.12, T:F.2
- 1 x SPM: SPERMINE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Ramrath, D.J.F. et al., Evolutionary shift toward protein-based architecture in trypanosomal mitochondrial ribosomes. Science (2018)
- Release Date
- 2018-09-26
- Peptides
- mS48: A
mS51: B
mS56: C
mS59: D
mS60: E
mS61: F
mS62: G
mS63: H
mS64: I
mS65: J
mS66: K
mS68: L
mS73: M
mS74: N
mS55m: O
bS6m: P
uS8m: Q
uS9m: R
uS11m: S
uS12m: T
uS15m: U
bS16m: V
uS17m: W
bS18m: X
uS21m: Y
mt-IF-3: Z
mS22: 0
mS23: 1
mS26: 2
mS34: 3
mS37: 4
mS38: 5
mS41: 6
mS42: 7
mS43: 8
mS47: 9
Unknown protein: b
Unknown protein: c
Unknown protein: d - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
DAB
DDC
DID
DLE
DMF
DNG
DOH
DPI
DQJ
DRK
DSL
DUM
DZN
DaO
CEP
CFQ
CHR
CIS
CKT
CLU
COV
CPW
CQX
CRY
CUZ
CZ0
Ca1
Cb2
Cd3
Cj4
Cm5
Cn6
Cp7
Cq8
Cr9
Cvb
UQc
USd
UT
SMTL ID : 6hiy.1
Cryo-EM structure of the Trypanosoma brucei mitochondrial ribosome - This entry contains the body of the small mitoribosomal subunit in complex with mt-IF-3
mS48
mS51
mS56
mS59
mS60
mS61
mS62
mS63
mS64
mS65
mS66
mS68
mS73
mS74
mS55m
bS6m
uS8m
uS9m
uS11m
uS12m
uS15m
bS16m
uS17m
bS18m
uS21m
mt-IF-3
mS22
mS23
mS26
mS34
mS37
mS38
mS41
mS42
mS43
mS47
Unknown protein
Unknown protein
Unknown protein
Related Entries With Identical Sequence
3jc2.1 | 4uq8.1 | 4v7r.57 | 4v7r.118 | 4wz7.1 | 5a5u.1 | 5cod.1 | 5cod.2 | 5cod.3 | 5cod.4 | 5cod.5 | 5cod.6 | 5dn6.1 | 5flz.1 | 5fm1.1 | 5j7y.36 | 5k1h.1 | 5lqx.1 | 5lqy.1 | 5lqz.1 | 5tj5.1 | 5vox.1 | 5voy.1 | 5voz.1 | 6h8k.18 | 6h8k.39 | 6hiv.1 | 6hiv.2 | 6hiv.3 | 6hiv.4 more...less...6hiv.5 | 6hiv.6 | 6hiv.7 | 6hiv.8 | 6hiv.9 | 6hiv.10 | 6hiv.11 | 6hiv.12 | 6hiv.13 | 6hiv.14 | 6hiv.29 | 6hiv.30 | 6hiv.31 | 6hiv.32 | 6hiv.34 | 6hiv.35 | 6hiv.37 | 6hiv.38 | 6hiv.39 | 6hiv.40 | 6hiv.42 | 6hiv.43 | 6hiv.44 | 6hiv.45 | 6hiv.46 | 6hiv.49 | 6hiv.51 | 6hiv.52 | 6hiv.53 | 6hiv.54 | 6hiv.55 | 6hiv.56 | 6hiv.57 | 6hiv.58 | 6hiv.59 | 6hiw.1 | 6hiz.1 | 6sg9.1 | 6sga.1 | 6sga.2 | 6sga.3 | 6sga.5 | 6sga.6 | 6sga.8 | 6sga.9 | 6sga.11 | 6sga.12 | 6sga.13 | 6sga.14 | 6sga.15 | 6sga.16 | 6sga.17 | 6sga.18 | 6sga.19 | 6sga.20 | 6sga.21 | 6sga.22 | 6sgb.1 | 6sgb.2 | 6sgb.3 | 6sgb.5 | 6sgb.6 | 6sgb.8 | 6sgb.9 | 6sgb.11 | 6sgb.12 | 6sgb.13 | 6sgb.14 | 6sgb.15 | 6sgb.16 | 6sgb.17 | 6sgb.18 | 6sgb.19 | 6sgb.20 | 6sgb.21 | 6sgb.22 | 6sgb.61 | 6sgb.98 | 7a5j.58 | 7ar9.1 | 7ard.1 | 7n6g.56 | 7ogr.1 | 7pkq.1 | 7pua.2 | 7pua.3 | 7pua.4 | 7pua.5 | 7pua.7 | 7pua.8 | 7pua.10 | 7pua.11 | 7pua.12 | 7pua.13 | 7pua.15 | 7pua.16 | 7pua.21 | 7pua.23 | 7pua.24 | 7pua.25 | 7pua.33 | 7pua.36 | 7pua.37 | 7pua.38 | 7pua.39 | 7pua.41 | 7pua.46 | 7pua.47 | 7pua.73 | 7pub.2 | 7pub.3 | 7pub.4 | 7pub.5 | 7pub.7 | 7pub.8 | 7pub.10 | 7pub.11 | 7pub.12 | 7pub.13 | 7pub.15 | 7pub.16 | 7pub.21 | 7pub.23 | 7pub.24 | 7pub.25 | 7pub.26 | 7pub.27 | 7pub.32 | 7pub.37 | 7pub.40 | 7pub.41 | 7pub.42 | 7pub.43 | 7pub.44 | 7pub.45 | 7pub.46 | 7pub.47 | 7pub.49 | 7pub.54 | 7pub.55 | 7uw9.1 | 7uwa.1 | 7uwb.1 | 7uwc.1 | 7uwd.1 | 7xom.1 | 8uy4.1 | 9f1c.42