SMTL ID : 6hl5.1

Factor Inhibiting HIF (FIH) in complex with zinc, NOG and ASPP1(932-954)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.98 Å

Oligo State

hetero-2-2-mer

Ligands

8 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 6 residues within 4Å: Chain A: R.34, S.97, T.98, H.99, R.144 Ligands: SO4.6 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.34, A:R.34, A:S.97, A:H.99, A:R.144 GOL.2: 8 residues within 4Å: Chain A: K.100, L.102, P.198, Y.231, S.241, Q.242, V.243, D.244 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.241 Water bridges: A:V.243, A:D.244 GOL.3: 4 residues within 4Å: Chain A: S.92, Q.149, T.150, N.152 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.149, A:N.152 GOL.4: 4 residues within 4Å: Chain A: L.151, N.152, D.153, F.163 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:L.151 GOL.11: 6 residues within 4Å: Chain C: R.34, S.97, T.98, H.99, R.144 Ligands: SO4.16 5 PLIP interactions: 5 interactions with chain C Hydrogen bonds: C:R.34, C:R.34, C:S.97, C:H.99, C:R.144 GOL.12: 8 residues within 4Å: Chain C: K.100, L.102, P.198, Y.231, S.241, Q.242, V.243, D.244 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:Y.231, C:S.241 Water bridges: C:V.243, C:D.244 GOL.13: 4 residues within 4Å: Chain C: S.92, Q.149, T.150, N.152 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:Q.149, C:T.150, C:N.152 GOL.14: 4 residues within 4Å: Chain C: L.151, N.152, D.153, F.163 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:L.151

8 x SO4: SULFATE ION(Non-functional Binders)

SO4.5: 2 residues within 4Å: Chain A: K.312, A.313 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.223, A:A.313 SO4.6: 6 residues within 4Å: Chain A: R.144, E.193, G.194, L.286, N.287 Ligands: GOL.1 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.34, A:E.193, A:N.287 Water bridges: A:R.144 Salt bridges: A:R.144 SO4.7: 2 residues within 4Å: Chain A: R.121, E.123 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.121 SO4.8: 4 residues within 4Å: Chain A: R.139, G.141, E.142, E.143 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.142, A:E.143 Salt bridges: A:R.139 SO4.15: 2 residues within 4Å: Chain C: K.312, A.313 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:A.313 SO4.16: 6 residues within 4Å: Chain C: R.144, E.193, G.194, L.286, N.287 Ligands: GOL.11 6 PLIP interactions: 6 interactions with chain C Hydrogen bonds: C:R.34, C:E.193, C:E.193, C:N.287 Water bridges: C:R.144 Salt bridges: C:R.144 SO4.17: 2 residues within 4Å: Chain C: R.121, E.123 1 PLIP interactions: 1 interactions with chain C Salt bridges: C:R.121 SO4.18: 4 residues within 4Å: Chain C: R.139, G.141, E.142, E.143 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:E.142, C:E.143 Salt bridges: C:R.139

2 x ZN: ZINC ION(Non-covalent)

ZN.9: 4 residues within 4Å: Chain A: H.200, D.202, H.280 Ligands: OGA.10 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.200, A:D.202, A:H.280, H2O.1 ZN.19: 4 residues within 4Å: Chain C: H.200, D.202, H.280 Ligands: OGA.20 4 PLIP interactions: 3 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:H.200, C:D.202, C:H.280, H2O.6

2 x OGA: N-OXALYLGLYCINE(Non-covalent)

OGA.10: 13 residues within 4Å: Chain A: Y.146, L.189, T.197, H.200, D.202, N.206, F.208, K.215, H.280, I.282, N.295, W.297 Ligands: ZN.9 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:Y.146, A:T.197, A:N.206, A:N.295 Salt bridges: A:K.215, A:H.280 OGA.20: 13 residues within 4Å: Chain C: Y.146, L.189, T.197, H.200, D.202, N.206, F.208, K.215, H.280, I.282, N.295, W.297 Ligands: ZN.19 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:N.206, C:N.295 Salt bridges: C:K.215, C:H.280

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Leissing, T.M. et al., Factor Inhibiting HIF (FIH) in complex with zinc, NOG and ASPP1(932-954). To Be Published

Release Date

2019-10-09

Peptides

Hypoxia-inducible factor 1-alpha inhibitor: AC
Apoptosis-stimulating of p53 protein 1: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
A

B
S

D
S

Hypoxia-inducible factor 1-alpha inhibitor

Apoptosis-stimulating of p53 protein 1

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