SMTL ID : 6hl6.1

Factor Inhibiting HIF (FIH) in complex with zinc, NOG and iASPP(670-693)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.97 Å

Oligo State

hetero-2-2-mer

Ligands

10 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 4 residues within 4Å: Chain A: L.151, N.152, V.155, F.163 No protein-ligand interaction detected (PLIP) GOL.2: 1 residues within 4Å: Chain A: R.121 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.121, A:R.121 GOL.3: 3 residues within 4Å: Chain A: R.34, H.99, R.144 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:R.34, A:R.34, A:H.99, A:H.99, A:R.144 Water bridges: A:E.142, A:E.142 GOL.4: 6 residues within 4Å: Chain A: K.100, Y.231, S.241, Q.242, V.243, D.244 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Y.231, A:S.241 Water bridges: A:S.241 GOL.5: 3 residues within 4Å: Chain A: E.84, G.156, R.157 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.84, A:R.157 GOL.11: 4 residues within 4Å: Chain C: L.151, N.152, V.155, F.163 No protein-ligand interaction detected (PLIP) GOL.12: 1 residues within 4Å: Chain C: R.121 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:R.121, C:R.121 GOL.13: 3 residues within 4Å: Chain C: R.34, H.99, R.144 7 PLIP interactions: 7 interactions with chain C Hydrogen bonds: C:R.34, C:R.34, C:H.99, C:H.99, C:R.144 Water bridges: C:E.142, C:E.142 GOL.14: 6 residues within 4Å: Chain C: K.100, Y.231, S.241, Q.242, V.243, D.244 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:S.241 Water bridges: C:S.241, C:D.244 GOL.15: 3 residues within 4Å: Chain C: E.84, G.156, R.157 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:E.84, C:R.157

6 x SO4: SULFATE ION(Non-functional Binders)

SO4.6: 4 residues within 4Å: Chain A: R.139, G.141, E.142, E.143 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.142, A:E.143 Salt bridges: A:R.139 SO4.7: 5 residues within 4Å: Chain A: R.144, E.193, G.194, L.286, N.287 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.34, A:E.193, A:E.193, A:N.287 Salt bridges: A:R.144 SO4.8: 2 residues within 4Å: Chain A: K.312, A.313 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:A.313 Water bridges: A:H.314 SO4.16: 4 residues within 4Å: Chain C: R.139, G.141, E.142, E.143 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:E.142, C:E.143 Salt bridges: C:R.139 SO4.17: 5 residues within 4Å: Chain C: R.144, E.193, G.194, L.286, N.287 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:R.34, C:E.193, C:N.287 Salt bridges: C:R.144 SO4.18: 2 residues within 4Å: Chain C: K.312, A.313 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:A.313 Water bridges: C:H.314

2 x ZN: ZINC ION(Non-covalent)

ZN.9: 4 residues within 4Å: Chain A: H.200, D.202, H.280 Ligands: OGA.10 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.200, A:D.202, A:H.280, H2O.1 ZN.19: 4 residues within 4Å: Chain C: H.200, D.202, H.280 Ligands: OGA.20 4 PLIP interactions: 3 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:H.200, C:D.202, C:H.280, H2O.10

2 x OGA: N-OXALYLGLYCINE(Non-covalent)

OGA.10: 13 residues within 4Å: Chain A: Y.146, L.189, T.197, H.200, D.202, N.206, F.208, K.215, H.280, I.282, N.295, W.297 Ligands: ZN.9 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:T.197, A:N.206, A:N.295 Salt bridges: A:K.215, A:H.280 OGA.20: 13 residues within 4Å: Chain C: Y.146, L.189, T.197, H.200, D.202, N.206, F.208, K.215, H.280, I.282, N.295, W.297 Ligands: ZN.19 7 PLIP interactions: 7 interactions with chain C Hydrogen bonds: C:Y.146, C:T.197, C:T.197, C:N.206, C:N.295 Salt bridges: C:K.215, C:H.280

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Leissing, T.M. et al., Factor Inhibiting HIF (FIH) in complex with zinc, NOG and iASPP(670-693). To Be Published

Release Date

2019-10-09

Peptides

Hypoxia-inducible factor 1-alpha inhibitor: AC
RelA-associated inhibitor: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
A

B
S

D
S

Hypoxia-inducible factor 1-alpha inhibitor

RelA-associated inhibitor

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