SMTL ID : 6hsc.1 (1 other biounit)

Structure of Human Serum Albumin in complex with Aristolochic Acid at 1.9 A resolution

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

7 x MYR: MYRISTIC ACID(Non-covalent)(Covalent)

MYR.1: 18 residues within 4Å: Chain A: S.366, V.368, L.369, R.372, P.408, L.411, I.412, N.415, F.427, L.431, L.454, G.458, M.470, A.473, E.474, L.477, R.509 Ligands: MYR.2 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:V.368, A:P.408, A:L.411, A:N.415, A:F.427, A:L.431, A:A.473, A:E.474, A:L.477 Hydrogen bonds: A:S.366, A:L.369 Salt bridges: A:R.372, A:R.509 MYR.2: 12 residues within 4Å: Chain A: L.411, N.415, R.434, Y.435, V.439, L.454, L.481, L.484, R.509, F.512, S.513 Ligands: MYR.1 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:L.411, A:Y.435, A:V.439, A:L.454, A:L.454, A:L.484, A:F.512, A:F.512 Salt bridges: A:R.434, A:K.438 MYR.3: 13 residues within 4Å: Chain A: L.38, L.46, V.47, Y.174, P.176, L.274, L.275, A.278, R.281, A.282, L.307, L.308, S.311 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:L.38, A:L.46, A:V.47, A:P.176, A:L.274, A:L.275, A:A.278, A:L.307, A:L.308 Hydrogen bonds: A:Y.174, A:S.311 Water bridges: A:H.312 Salt bridges: A:R.281 MYR.4: 11 residues within 4Å: Chain A: Y.425, N.429, F.531, K.549, A.552, L.553, L.556, V.571, M.572, F.575, V.600 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:F.531, A:F.531, A:A.552, A:L.553, A:L.556, A:V.571, A:F.575, A:F.575, A:V.600 Salt bridges: A:K.549 MYR.5: 10 residues within 4Å: Chain A: R.233, K.236, A.237, F.252, S.256, D.348, V.349, L.351, M.353 Ligands: EDO.8 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:A.237, A:F.252, A:F.252, A:D.348, A:V.349, A:L.351 Salt bridges: A:R.233 MYR.6: 11 residues within 4Å: Chain A: R.141, F.158, L.159, Y.162, I.166, L.178, F.181, A.182, Y.185, F.189, R.210 21 PLIP interactions: 21 interactions with chain A Hydrophobic interactions: A:F.158, A:F.158, A:L.159, A:Y.162, A:Y.162, A:Y.162, A:Y.162, A:Y.162, A:I.166, A:I.166, A:L.178, A:F.181, A:A.182, A:Y.185, A:Y.185, A:Y.185, A:F.189, A:F.189 Hydrogen bonds: A:Y.185 Salt bridges: A:R.141, A:R.210 MYR.7: 10 residues within 4Å: Chain A: K.223, R.242, L.243, R.246, L.262, H.266, R.281, L.284, I.314, A.315 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:L.243, A:L.262, A:L.284, A:I.314 Salt bridges: A:K.223, A:R.246

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.8: 4 residues within 4Å: Chain A: S.256, K.257, T.260 Ligands: MYR.5 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.256, A:T.260 EDO.9: 3 residues within 4Å: Chain A: F.73, N.85, L.93 2 PLIP interactions: 2 interactions with chain A Water bridges: A:K.97, A:K.97

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pomyalov, S. et al., Structure of Human Serum Albumin in complex with Aristolochic Acid at 1.9 A resolution. To Be Published

Release Date

2019-10-23

Peptides

Serum albumin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Serum albumin

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