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SMTL ID : 7ov6.2
(1 other biounit)
Structure of Human Serum Albumin in complex with Aristolochic Acid I at 1.9 A resolution - Optimized
Coordinates
PDB Format
Compare
Method
X-RAY DIFFRACTION 1.90 Å
Oligo State
monomer
Ligands
6 x
MYR
:
MYRISTIC ACID
(Non-covalent)
MYR.1:
13 residues within 4Å:
Chain A:
R.34
,
L.46
,
V.47
,
F.94
,
Y.174
,
P.176
,
L.275
,
A.278
,
R.281
,
A.282
,
L.307
,
L.308
,
S.311
11
PLIP interactions
:
11 interactions with chain A
Hydrophobic interactions:
A:L.46
,
A:L.46
,
A:F.94
,
A:P.176
,
A:L.275
,
A:A.278
,
A:L.308
Hydrogen bonds:
A:Y.174
,
A:S.311
Water bridges:
A:H.312
Salt bridges:
A:R.281
MYR.2:
16 residues within 4Å:
Chain A:
S.366
,
V.368
,
L.369
,
R.372
,
P.408
,
L.411
,
I.412
,
N.415
,
F.427
,
V.457
,
G.458
,
A.473
,
E.474
,
L.477
,
R.509
Ligands:
MYR.3
10
PLIP interactions
:
10 interactions with chain A
Hydrophobic interactions:
A:P.408
,
A:I.412
,
A:N.415
,
A:F.427
,
A:V.457
,
A:E.474
Hydrogen bonds:
A:S.366
,
A:L.369
Salt bridges:
A:R.372
,
A:R.509
MYR.3:
13 residues within 4Å:
Chain A:
L.411
,
N.415
,
R.434
,
Y.435
,
V.439
,
L.447
,
L.454
,
L.477
,
L.481
,
L.484
,
F.512
,
S.513
Ligands:
MYR.2
15
PLIP interactions
:
15 interactions with chain A
Hydrophobic interactions:
A:L.411
,
A:Y.435
,
A:Y.435
,
A:Y.435
,
A:V.439
,
A:L.447
,
A:L.454
,
A:L.454
,
A:L.477
,
A:L.481
,
A:L.484
,
A:F.512
Water bridges:
A:N.415
Salt bridges:
A:R.434
,
A:K.438
MYR.4:
12 residues within 4Å:
Chain A:
Y.425
,
N.429
,
F.526
,
F.531
,
K.549
,
L.553
,
L.556
,
H.559
,
M.572
,
F.575
,
V.600
,
Q.604
9
PLIP interactions
:
9 interactions with chain A
Hydrophobic interactions:
A:F.526
,
A:F.531
,
A:F.531
,
A:L.556
,
A:F.575
,
A:V.600
,
A:V.600
,
A:Q.604
Salt bridges:
A:K.549
MYR.5:
12 residues within 4Å:
Chain A:
R.233
,
A.234
,
A.237
,
V.240
,
D.348
,
L.351
,
G.352
,
L.371
,
A.374
,
K.375
,
E.378
,
V.506
4
PLIP interactions
:
4 interactions with chain A
Hydrophobic interactions:
A:A.237
,
A:V.240
,
A:L.351
,
A:A.374
MYR.6:
9 residues within 4Å:
Chain A:
W.238
,
L.243
,
R.246
,
L.262
,
H.266
,
R.281
,
S.311
,
I.314
,
A.315
4
PLIP interactions
:
4 interactions with chain A
Hydrophobic interactions:
A:L.243
,
A:L.262
,
A:I.314
Salt bridges:
A:H.266
1 x
GOQ
:
8-methoxy-6-nitro-naphtho[1,2-e][1,3]benzodioxole-5-carboxylic acid
(Non-covalent)
GOQ.7:
14 residues within 4Å:
Chain A:
L.139
,
R.141
,
M.147
,
F.158
,
Y.162
,
L.163
,
I.166
,
L.178
,
F.181
,
A.182
,
Y.185
,
F.189
,
L.206
,
R.210
12
PLIP interactions
:
12 interactions with chain A
Hydrophobic interactions:
A:Y.162
,
A:Y.162
,
A:Y.162
,
A:I.166
,
A:A.182
,
A:Y.185
,
A:Y.185
,
A:Y.185
Hydrogen bonds:
A:Y.185
Salt bridges:
A:R.141
,
A:R.210
pi-Stacking:
A:Y.185
Links
RCSB
PDBe
PDBe-KB
PDBj
PDBsum
CATH
PLIP
Citation
Pomyalov, S. et al., Structural and mechanistic insights for the binding of aristolochic acids and their active metabolites to human serum albumin. To Be Published
Release Date
2022-06-22
Peptides
Serum albumin:
A
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
B
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Serum albumin
Related Entries With Identical Sequence
4bke.1
|
5ujb.1
|
5ujb.2
|
6hsc.1
|
6hsc.2
|
7ov1.1
|
7ov1.2
|
7ov5.1
|
7ov5.2
|
7ov6.1
|
7woj.1
|
7wok.1
|
7wok.2
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