SMTL ID : 6i18.1

CRYSTAL STRUCTURE OF FASCIN IN COMPLEX WITH BDP-13176

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.49 Å

Oligo State

monomer

Ligands

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.1: 6 residues within 4Å: Chain A: W.101, V.134, Y.186, T.213, L.214 Ligands: H0N.7 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:V.134 Hydrogen bonds: A:W.101, A:L.214 Water bridges: A:V.134, A:V.134

5 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 4 residues within 4Å: Chain A: I.17, N.18, R.100, S.133 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.100, A:S.133 EDO.3: 8 residues within 4Å: Chain A: Q.266, A.267, A.268, E.270, R.344, L.375, F.376, L.377 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.344, A:L.375 EDO.4: 5 residues within 4Å: Chain A: T.326, A.327, S.328, S.329, N.331 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:S.328, A:S.329, A:S.329, A:N.331 Water bridges: A:T.326 EDO.5: 2 residues within 4Å: Chain A: E.116, R.118 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.118, A:R.118 Water bridges: A:T.115 EDO.6: 7 residues within 4Å: Chain A: L.380, I.381, N.382, R.383, P.384, L.416, F.418 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.383, A:R.383

1 x H0N: 5-[(3,4-dichlorophenyl)methyl]-4-oxidanylidene-1-piperidin-4-yl-~{N}-pyridin-4-yl-pyrazolo[4,3-c]pyridine-7-carboxamide(Non-covalent)

H0N.7: 15 residues within 4Å: Chain A: F.14, L.16, L.48, A.58, V.60, I.93, A.95, W.101, L.103, V.134, L.214, E.215, F.216, R.217 Ligands: ACT.1 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:L.48, A:V.60, A:I.93, A:W.101, A:E.215, A:F.216 Hydrogen bonds: A:F.216 Water bridges: A:I.93 pi-Stacking: A:F.14

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Francis, S. et al., Structure-based design, synthesis and biological evaluation of a novel series of isoquinolone and pyrazolo[4,3-c]pyridine inhibitors of fascin 1 as potential anti-metastatic agents. Bioorg.Med.Chem.Lett. (2019)

Release Date

2019-02-27

Peptides

Fascin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Fascin

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