SMTL ID : 6i5k.3 (2 other biounits)

Crystal structure of CLK1 in complexed with furo[3,2-b]pyridine compound VN345 (derivative of compound 12h)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

monomer

Ligands

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 4 residues within 4Å: Chain A: H.190, S.192, T.193, L.194 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.193, A:L.194 Salt bridges: A:H.190

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 5 residues within 4Å: Chain A: M.2, H.3, C.6, E.24, K.29 1 PLIP interactions: 1 interactions with chain A Water bridges: A:K.49 GOL.3: 7 residues within 4Å: Chain A: F.27, K.46, A.57, A.58, E.61, D.180, G.182 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.46, A:K.46, A:A.57

1 x H3H: 5-(1-methylpyrazol-4-yl)-3-(3-propan-2-yloxyphenyl)furo[3,2-b]pyridine(Non-covalent)

H3H.4: 17 residues within 4Å: Chain A: L.22, G.23, E.24, F.27, V.30, A.44, K.46, F.96, E.97, L.98, L.99, G.100, D.105, E.147, L.150, V.179, D.180 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:L.22, A:F.27, A:A.44, A:F.96, A:F.96, A:L.150 Hydrogen bonds: A:K.46, A:D.180

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nemec, V. et al., Furo[3,2-b]pyridine: A Privileged Scaffold for Highly Selective Kinase Inhibitors and Effective Modulators of the Hedgehog Pathway. Angew. Chem. Int. Ed. Engl. (2019)

Release Date

2019-01-09

Peptides

Dual specificity protein kinase CLK1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

Dual specificity protein kinase CLK1

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