SMTL ID : 6i5l.2 (2 other biounits)

Crystal structure of CLK1 in complexed with furo[3,2-b]pyridine compound VN316 (derivative of compound 12h)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.55 Å

Oligo State

monomer

Ligands

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 4 residues within 4Å: Chain A: M.2, H.3, E.24, K.29 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:K.29, A:K.49

1 x H3Q: 3-(3-cyclobutylphenyl)-5-(1-methylpyrazol-4-yl)furo[3,2-b]pyridine(Non-covalent)

H3Q.2: 14 residues within 4Å: Chain A: L.22, G.23, E.24, F.27, V.30, A.44, K.46, F.96, E.97, L.99, G.100, L.150, V.179, D.180 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:L.22, A:F.27, A:V.30, A:A.44, A:F.96, A:F.96, A:L.99, A:L.150 Hydrogen bonds: A:K.46, A:D.180

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 7 residues within 4Å: Chain A: F.27, K.46, A.57, A.58, E.61, D.180, G.182 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.46, A:D.180

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nemec, V. et al., Furo[3,2-b]pyridine: A Privileged Scaffold for Highly Selective Kinase Inhibitors and Effective Modulators of the Hedgehog Pathway. Angew. Chem. Int. Ed. Engl. (2019)

Release Date

2019-01-09

Peptides

Dual specificity protein kinase CLK1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Dual specificity protein kinase CLK1

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