SMTL ID : 6jke.2 (1 other biounit)

Discovery and the crystal structure of NS5 in complex with the N-terminal bromodomain of BRD2.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

homo-dimer

Ligands

2 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.1: 6 residues within 4Å: Chain A: V.31, L.38, Y.41, Y.83, N.84, I.90 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.84 DMS.3: 6 residues within 4Å: Chain B: V.31, L.38, Y.41, Y.83, N.84, I.90 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.84

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 4 residues within 4Å: Chain A: R.56, R.57, N.60, Y.62 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.56, A:N.60 Water bridges: A:R.56, A:R.56 Salt bridges: A:R.56 SO4.4: 4 residues within 4Å: Chain B: R.56, R.57, N.60, Y.62 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:R.56, B:N.60 Water bridges: B:R.56, B:R.56 Salt bridges: B:R.56

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Deshmukh, P. et al., Novel pyrano 1,3 oxazine based ligand inhibits the epigenetic reader hBRD2 in glioblastoma. Biochem.J. (2020)

Release Date

2020-07-01

Peptides

Bromodomain-containing protein 2: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
C

Bromodomain-containing protein 2

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