SMTL ID : 7lak.1

Crystal structure of the first bromodomain (BD1) of human BRD2 bound to volasertib

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.83 Å

Oligo State

monomer

Ligands

1 x IBI: N-{trans-4-[4-(cyclopropylmethyl)piperazin-1-yl]cyclohexyl}-4-{[(7R)-7-ethyl-5-methyl-8-(1-methylethyl)-6-oxo-5,6,7,8-tetrahydropteridin-2-yl]amino}-3-methoxybenzamide(Non-covalent)

IBI.1: 10 residues within 4Å: Chain A: W.25, P.26, Q.29, V.31, L.36, L.38, Y.41, Y.83, N.84, I.90 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:V.31, A:L.38, A:Y.41, A:Y.83 Hydrogen bonds: A:N.84 Water bridges: A:Q.29 pi-Stacking: A:W.25

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Karim, R.M. et al., Differential BET Bromodomain Inhibition by Dihydropteridinone and Pyrimidodiazepinone Kinase Inhibitors. J.Med.Chem. (2021)

Release Date

2021-07-14

Peptides

Bromodomain-containing protein 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Bromodomain-containing protein 2

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