SMTL ID : 7lau.1

Crystal structure of the first bromodomain (BD1) of human BRD2 bound to ERK5-IN-1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

monomer

Ligands

1 x VYJ: 11-cyclopentyl-2-({2-ethoxy-4-[4-(4-methylpiperazin-1-yl)piperidine-1-carbonyl]phenyl}amino)-5-methyl-5,11-dihydro-6H-pyrimido[4,5-b][1,4]benzodiazepin-6-one(Non-covalent)

VYJ.1: 9 residues within 4Å: Chain A: W.25, P.26, F.27, Q.29, V.31, L.36, L.38, N.84, I.90 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:W.25, A:P.26, A:Q.29, A:L.36, A:L.38, A:I.90 Hydrogen bonds: A:N.84 pi-Stacking: A:W.25

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Karim, R.M. et al., Differential BET Bromodomain Inhibition by Dihydropteridinone and Pyrimidodiazepinone Kinase Inhibitors. J.Med.Chem. (2021)

Release Date

2021-08-11

Peptides

Bromodomain-containing protein 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Bromodomain-containing protein 2

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