SMTL ID : 6jq0.1

CryoEM structure of Abo1 Walker B (E372Q) mutant hexamer - ATP complex

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-6-1-mer

Ligands

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Covalent)

ADP.1: 12 residues within 4Å: Chain A: S.275, G.277, P.317, G.318, T.319, G.320, K.321, T.322, L.323, I.455, G.484, A.485 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:G.277, A:G.320, A:K.321, A:T.322, A:L.323 Salt bridges: A:K.321

5 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Covalent)

ATP.2: 15 residues within 4Å: Chain A: R.434, R.437 Chain B: G.277, P.317, G.318, T.319, G.320, K.321, T.322, L.323, I.455, H.459, G.484, A.485, R.488 12 PLIP interactions: 8 interactions with chain B, 4 interactions with chain A Hydrogen bonds: B:G.277, B:G.277, B:T.319, B:K.321, B:T.322, B:T.322, B:L.323, B:R.488 Salt bridges: A:R.434, A:R.434, A:R.434, A:R.437 ATP.3: 16 residues within 4Å: Chain B: R.434, R.437 Chain C: G.277, P.316, P.317, G.318, T.319, G.320, K.321, T.322, L.323, N.423, I.455, H.459, G.484, A.485 12 PLIP interactions: 3 interactions with chain B, 9 interactions with chain C Salt bridges: B:R.434, B:R.434, B:R.437, C:K.321, C:K.321, C:K.321 Hydrogen bonds: C:G.277, C:G.277, C:T.319, C:G.320, C:T.322, C:L.323 ATP.4: 13 residues within 4Å: Chain C: R.434, R.437 Chain D: P.317, G.318, T.319, G.320, K.321, T.322, L.323, N.423, I.455, H.459, G.484 11 PLIP interactions: 7 interactions with chain D, 4 interactions with chain C Hydrogen bonds: D:G.277, D:T.319, D:G.320, D:T.322, D:T.322, D:R.326 Salt bridges: D:K.321, C:R.434, C:R.434, C:R.434, C:R.437 ATP.5: 16 residues within 4Å: Chain D: R.434, R.437 Chain E: G.277, P.316, P.317, G.318, T.319, G.320, K.321, T.322, L.323, N.423, I.455, H.459, G.484, A.485 9 PLIP interactions: 3 interactions with chain D, 6 interactions with chain E Salt bridges: D:R.434, D:R.434, D:R.437 Hydrogen bonds: E:G.277, E:T.319, E:G.320, E:T.322, E:T.322, E:H.459 ATP.6: 15 residues within 4Å: Chain E: R.434, R.437 Chain F: G.277, P.316, P.317, G.318, T.319, G.320, K.321, T.322, L.323, I.455, H.459, G.484, A.485 9 PLIP interactions: 3 interactions with chain E, 6 interactions with chain F Salt bridges: E:R.434, E:R.434, E:R.437 Hydrogen bonds: F:G.277, F:T.319, F:G.320, F:T.322, F:L.323, F:H.459

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cho, C. et al., Structural basis of nucleosome assembly by the Abo1 AAA+ ATPase histone chaperone. Nat Commun (2019)

Release Date

2019-12-25

Peptides

Uncharacterized AAA domain-containing protein C31G5.19: ABCDEF
unknown substrate: G

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

Uncharacterized AAA domain-containing protein C31G5.19

unknown substrate

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