SMTL ID : 6jse.1

Crystal Structure of BACE1 in complex with N-(3-((4S,5R)-2-amino-4-methyl-5-phenyl-5,6-dihydro-4H-1,3-thiazin-4-yl)-4-fluorophenyl)-5-(fluoromethoxy)pyrazine-2-carboxamide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

6 x IOD: IODIDE ION(Non-functional Binders)

IOD.1: 4 residues within 4Å: Chain A: H.68, T.126, E.127, S.128 Ligand excluded by PLIP IOD.2: 1 residues within 4Å: Chain A: R.372 Ligand excluded by PLIP IOD.3: 2 residues within 4Å: Chain A: H.68, K.130 Ligand excluded by PLIP IOD.4: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP IOD.5: 2 residues within 4Å: Chain A: R.119, E.157 Ligand excluded by PLIP IOD.6: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.7: 5 residues within 4Å: Chain A: Y.94, T.95, Q.96, Y.221 Ligands: C6R.8 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.95, A:T.95

1 x C6R: N-[3-[(4S,5R)-2-azanyl-4-methyl-5-phenyl-5,6-dihydro-1,3-thiazin-4-yl]-4-fluoranyl-phenyl]-5-(fluoranylmethoxy)pyrazine-2-carboxamide(Non-covalent)

C6R.8: 24 residues within 4Å: Chain A: K.32, G.34, Q.35, G.36, Y.37, L.53, D.55, G.57, S.58, V.92, Y.94, Q.96, F.131, I.133, I.141, R.151, D.251, S.252, G.253, T.254, T.255, R.330, A.358 Ligands: DMS.7 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:V.92, A:Y.94, A:Y.94, A:Y.94 Hydrogen bonds: A:G.36, A:D.55, A:G.253 Halogen bonds: A:K.32

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fujimoto, K. et al., Structure-Based Design of Selective beta-Site Amyloid Precursor Protein Cleaving Enzyme 1 (BACE1) Inhibitors: Targeting the Flap to Gain Selectivity over BACE2. J.Med.Chem. (2019)

Release Date

2019-08-28

Peptides

Beta-secretase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Beta-secretase 1

Related Entries With Identical Sequence