SMTL ID : 6jt3.1

Crystal Structure of BACE1 in complex with N-{3-[(4R,5R,6R)-2-amino-5-fluoro-4,6-dimethyl-5,6-dihydro-4H-1,3-thiazin-4-yl]-4-fluorophenyl}-5-(fluoromethoxy)pyrazine-2-carboxamide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

monomer

Ligands

2 x IOD: IODIDE ION(Non-functional Binders)

IOD.1: 3 residues within 4Å: Chain A: H.68, E.127, S.128 Ligand excluded by PLIP IOD.2: 3 residues within 4Å: Chain A: H.68, D.129, K.130 Ligand excluded by PLIP

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 3 residues within 4Å: Chain A: R.73, Y.74, Q.76 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.74, A:Y.74

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.4: 7 residues within 4Å: Chain A: G.57, S.58, Y.94, I.149, R.151, Y.221 Ligands: C83.5 No protein-ligand interaction detected (PLIP)

1 x C83: N-[3-[(4R,5R,6R)-2-azanyl-5-fluoranyl-4,6-dimethyl-5,6-dihydro-1,3-thiazin-4-yl]-4-fluoranyl-phenyl]-5-(fluoranylmethoxy)pyrazine-2-carboxamide(Non-covalent)

C83.5: 19 residues within 4Å: Chain A: G.34, Q.35, G.36, Y.37, L.53, D.55, G.57, Y.94, F.131, I.133, I.141, D.251, S.252, G.253, T.254, T.255, R.330, A.358 Ligands: DMS.4 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.251, A:G.253

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tadano, G. et al., Discovery of an Extremely Potent Thiazine-Based beta-Secretase Inhibitor with Reduced Cardiovascular and Liver Toxicity at a Low Projected Human Dose. J.Med.Chem. (2019)

Release Date

2019-10-30

Peptides

Beta-secretase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Beta-secretase 1

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