SMTL ID : 6jt4.1

Crystal Structure of BACE1 in complex with N-{3-[(4S,6S)-2-amino-4-methyl-6-(trifluoromethyl)-5,6-dihydro-4H-1,3-thiazin-4-yl]-4-fluorophenyl}-5-(fluoromethoxy)pyrazine-2-carboxamide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

monomer

Ligands

3 x IOD: IODIDE ION(Non-functional Binders)

IOD.1: 4 residues within 4Å: Chain A: H.68, T.126, E.127, S.128 Ligand excluded by PLIP IOD.2: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP IOD.3: 2 residues within 4Å: Chain A: H.68, K.130 Ligand excluded by PLIP

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 9 residues within 4Å: Chain A: T.42, V.43, G.44, S.45, P.47, L.107, V.108, S.109, T.117 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:T.42, A:T.42, A:S.45, A:T.117 GOL.5: 6 residues within 4Å: Chain A: S.109, I.110, P.111, G.113, P.114, N.115 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.109, A:G.113, A:G.113

1 x C86: N-[3-[(4S,6S)-2-azanyl-4-methyl-6-(trifluoromethyl)-5,6-dihydro-1,3-thiazin-4-yl]-4-fluoranyl-phenyl]-5-(fluoranylmethoxy)pyrazine-2-carboxamide(Non-covalent)

C86.6: 17 residues within 4Å: Chain A: G.34, Q.35, G.36, Y.37, L.53, D.55, G.57, Y.94, F.131, I.133, I.141, D.251, S.252, G.253, T.254, T.255, A.358 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.36, A:D.251, A:G.253

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Anan, K. et al., Trifluoromethyl Dihydrothiazine-Based beta-Secretase (BACE1) Inhibitors with Robust Central beta-Amyloid Reduction and Minimal Covalent Binding Burden. Chemmedchem (2019)

Release Date

2020-01-15

Peptides

Beta-secretase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Beta-secretase 1

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