SMTL ID : 6kf7.3 (3 other biounits)

Microbial Hormone-sensitive lipase E53 mutant S285G

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

1 x D8F: (4-nitrophenyl) hexanoate(Covalent)

D8F.1: 9 residues within 4Å: Chain A: Y.38, G.90, G.91, S.162, A.163, L.193, L.212, F.220, H.284 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:Y.38, A:A.163, A:L.212, A:F.220, A:F.220 Salt bridges: A:H.284

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 6 residues within 4Å: Chain A: A.64, G.65, D.66, R.121, D.134 Ligands: 6NA.9 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.65 Water bridges: A:R.121 EDO.3: 3 residues within 4Å: Chain A: R.228, A.229, L.237 1 PLIP interactions: 1 interactions with chain A Water bridges: A:A.229 EDO.4: 2 residues within 4Å: Chain A: M.309, G.312 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:M.309, A:G.312

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.5: 8 residues within 4Å: Chain A: L.193, D.196, A.197, V.198, I.217, D.221, R.228, F.234 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:D.196, A:A.197, A:D.221, A:R.228, A:R.228 Water bridges: A:F.220, A:D.221 GOL.6: 3 residues within 4Å: Chain A: R.257, R.261 Ligands: GOL.7 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:R.257, A:R.261, A:R.261 Water bridges: A:D.258, A:E.278, A:E.278 GOL.7: 5 residues within 4Å: Chain A: A.201, A.205, F.206, R.257 Ligands: GOL.6 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:A.201, A:R.257, A:R.257 Water bridges: A:S.252 GOL.8: 4 residues within 4Å: Chain A: A.53, R.75, E.76, S.77 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.75, A:E.76, A:S.77, A:S.77

1 x 6NA: HEXANOIC ACID(Non-covalent)

6NA.9: 7 residues within 4Å: Chain A: P.68, D.96, D.119, Y.120, R.121, L.122 Ligands: EDO.2 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:D.96, A:L.122 Water bridges: A:R.121, A:L.122, A:H.126

1 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)

PGE.10: 3 residues within 4Å: Chain A: K.265, A.266, E.269 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.265

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Xiaochen, Y., Microbial Hormone-sensitive lipase E53 mutant S285G. To Be Published

Release Date

2020-07-08

Peptides

Lipase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

Lipase

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