SMTL ID : 7cih.1 (3 other biounits)

Microbial Hormone-sensitive lipase E53 mutant S285G

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.79 Å

Oligo State

monomer

Ligands

1 x D8F: (4-nitrophenyl) hexanoate(Non-covalent)

D8F.1: 11 residues within 4Å: Chain A: Y.38, G.89, G.90, G.91, S.162, A.163, L.193, L.212, I.217, F.220, H.284 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:Y.38, A:A.163, A:L.212, A:F.220 Hydrogen bonds: A:S.162 Salt bridges: A:H.284

5 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.2: 4 residues within 4Å: Chain A: A.53, R.75, E.76, S.77 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.76, A:S.77 DMS.6: 5 residues within 4Å: Chain A: A.201, A.205, F.206, R.257 Ligands: DMS.7 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.257, A:R.257 DMS.7: 3 residues within 4Å: Chain A: R.257, R.261 Ligands: DMS.6 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.261, A:R.261 DMS.12: 5 residues within 4Å: Chain A: M.21, A.22, G.23, P.24, M.29 No protein-ligand interaction detected (PLIP) DMS.13: 4 residues within 4Å: Chain A: K.12, L.15, G.209, F.210 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.12

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 4 residues within 4Å: Chain A: P.68, D.119, Y.120, R.121 No protein-ligand interaction detected (PLIP) GOL.5: 7 residues within 4Å: Chain A: L.193, D.196, A.197, I.217, D.221, R.228, F.234 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:D.196, A:A.197, A:R.228 Water bridges: A:D.221, A:D.221

5 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.4: 2 residues within 4Å: Chain A: E.136, R.232 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.136, A:R.232 EDO.8: 3 residues within 4Å: Chain A: A.13, F.14, A.292 2 PLIP interactions: 2 interactions with chain A Water bridges: A:F.14, A:A.292 EDO.9: 3 residues within 4Å: Chain A: R.140, P.179, A.180 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.140, A:P.179 Water bridges: A:R.140, A:D.181, A:D.181 EDO.10: 7 residues within 4Å: Chain A: H.42, G.43, D.98, T.99, H.100, H.101, N.102 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:H.42, A:D.98, A:H.101, A:N.102 Water bridges: A:D.46, A:L.103 EDO.11: 4 residues within 4Å: Chain A: I.55, N.57, R.70, H.101 3 PLIP interactions: 3 interactions with chain A Water bridges: A:N.57, A:D.98, A:H.101

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ding, Y. et al., Mechanism and Structural Insights Into a Novel Esterase, E53, Isolated From Erythrobacter longus . Front Microbiol (2021)

Release Date

2021-07-14

Peptides

Lipase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Lipase

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