SMTL ID : 6kf7.4 (3 other biounits)

Microbial Hormone-sensitive lipase E53 mutant S285G

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

1 x D8F: (4-nitrophenyl) hexanoate(Covalent)

D8F.1: 10 residues within 4Å: Chain A: Y.38, G.89, G.90, G.91, S.162, A.163, L.193, L.212, F.220, H.284 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:A.163, A:L.212, A:L.212, A:F.220 Water bridges: A:Y.38 Salt bridges: A:H.284 pi-Stacking: A:F.220

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 1 residues within 4Å: Chain A: R.75 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.75

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 4 residues within 4Å: Chain A: R.8, P.9, D.10, S.295 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.10 Water bridges: A:R.8, A:S.295 EDO.4: 6 residues within 4Å: Chain A: R.35, R.121, L.122, E.125, H.126 Ligands: EDO.5 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:L.122 EDO.5: 5 residues within 4Å: Chain A: P.68, D.119, Y.120, R.121 Ligands: EDO.4 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.119

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.6: 8 residues within 4Å: Chain A: L.193, D.196, A.197, V.198, I.217, D.221, R.228, F.234 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:A.197, A:D.221, A:R.228, A:R.228 Water bridges: A:F.220 GOL.7: 3 residues within 4Å: Chain A: R.257, R.261 Ligands: GOL.8 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.257, A:R.257, A:R.261, A:R.261 Water bridges: A:D.258 GOL.8: 5 residues within 4Å: Chain A: A.201, A.205, F.206, R.257 Ligands: GOL.7 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:A.201, A:R.257, A:R.257 GOL.9: 3 residues within 4Å: Chain A: A.74, R.75, D.112 2 PLIP interactions: 2 interactions with chain A Water bridges: A:A.74, A:D.112

1 x NPO: P-NITROPHENOL(Non-covalent)

NPO.10: 6 residues within 4Å: Chain A: K.12, L.15, E.16, E.208, G.209, F.210 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:L.15, A:F.210 Hydrogen bonds: A:E.208

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Xiaochen, Y., Microbial Hormone-sensitive lipase E53 mutant S285G. To Be Published

Release Date

2020-07-08

Peptides

Lipase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

Lipase

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