SMTL ID : 7cih.4 (3 other biounits)

Microbial Hormone-sensitive lipase E53 mutant S285G

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.79 Å

Oligo State

monomer

Ligands

1 x D8F: (4-nitrophenyl) hexanoate(Non-covalent)

D8F.1: 9 residues within 4Å: Chain A: Y.38, G.90, G.91, S.162, A.163, L.193, L.212, F.220, H.284 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:Y.38, A:A.163, A:L.212, A:L.212, A:F.220 Salt bridges: A:H.284

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 8 residues within 4Å: Chain A: L.193, D.196, A.197, V.198, I.217, D.221, R.228, F.234 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.196, A:A.197, A:R.228 Water bridges: A:F.220

3 x DIO: 1,4-DIETHYLENE DIOXIDE(Non-covalent)

DIO.3: 1 residues within 4Å: Chain A: R.75 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.75, A:R.75 DIO.4: 5 residues within 4Å: Chain A: I.7, K.12, L.15, G.209, F.210 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.12 DIO.9: 3 residues within 4Å: Chain A: F.14, M.44, A.292 No protein-ligand interaction detected (PLIP)

3 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.5: 4 residues within 4Å: Chain A: A.53, R.75, E.76, S.77 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.76 DMS.10: 3 residues within 4Å: Chain A: R.257, R.261 Ligands: DMS.11 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.261, A:R.261 DMS.11: 4 residues within 4Å: Chain A: A.205, F.206, R.257 Ligands: DMS.10 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.257, A:R.257

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.6: 3 residues within 4Å: Chain A: R.140, P.179, A.180 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.140, A:P.179 Water bridges: A:R.140, A:D.181 EDO.7: 2 residues within 4Å: Chain A: D.119, Y.120 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.119 Water bridges: A:R.121 EDO.8: 3 residues within 4Å: Chain A: P.146, S.147, E.148 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.147, A:E.148

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.12: 6 residues within 4Å: Chain A: S.145, P.146, S.147, G.150, R.151, T.152 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.150, A:T.152

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ding, Y. et al., Mechanism and Structural Insights Into a Novel Esterase, E53, Isolated From Erythrobacter longus . Front Microbiol (2021)

Release Date

2021-07-14

Peptides

Lipase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

Lipase

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