SMTL ID : 6krz.1 (2 other biounits)

Crystal structure of the human adiponectin receptor 1 D208A mutant

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.05 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 4 residues within 4Å: Chain A: S.50, F.51, R.52 Chain C: H.30 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain C Hydrogen bonds: A:F.51, A:R.52 Salt bridges: C:H.30

2 x OLA: OLEIC ACID(Non-covalent)

OLA.2: 16 residues within 4Å: Chain A: Y.139, L.145, S.149, A.198, F.201, L.202, M.236, Y.240, A.244, Y.247, F.270, V.274, A.277, A.278, H.281 Ligands: OLA.3 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:L.145, A:F.201, A:F.201, A:L.202, A:Y.240, A:Y.240, A:Y.247, A:Y.247, A:F.270, A:F.270, A:F.270, A:A.277, A:H.281 OLA.3: 12 residues within 4Å: Chain A: S.149, F.150, G.205, L.206, G.208, W.232, F.233, M.236, A.237, Y.240, H.281 Ligands: OLA.2 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:F.150, A:L.206, A:W.232, A:F.233, A:A.237, A:Y.240, A:Y.240, A:Y.240 Hydrogen bonds: A:S.149, A:Y.240, A:Y.240 Salt bridges: A:H.281

1 x ZN: ZINC ION(Non-covalent)

ZN.4: 4 residues within 4Å: Chain A: S.117, H.121, H.267, H.271 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.121, A:H.267, A:H.271

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tanabe, H. et al., Human adiponectin receptor AdipoR1 assumes closed and open structures. Commun Biol (2020)

Release Date

2020-08-19

Peptides

Adiponectin receptor protein 1: A
The heavy chain variable domain (Antibody): B
The light chain variable domain (Antibody): C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
D

C
E

Membrane

We predict this structure to be a membrane protein.
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Adiponectin receptor protein 1

The heavy chain variable domain (Antibody)

The light chain variable domain (Antibody)

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