SMTL ID : 6krz.3 (2 other biounits)

Crystal structure of the human adiponectin receptor 1 D208A mutant

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.05 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 4 residues within 4Å: Chain A: S.50, F.51, R.52 Chain C: H.30 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain C Hydrogen bonds: A:F.51, A:R.52 Salt bridges: C:H.30

1 x ZN: ZINC ION(Non-covalent)

ZN.2: 5 residues within 4Å: Chain A: S.117, H.121, H.267, H.271 Ligands: OLB.4 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.121, A:H.267, A:H.271

2 x OLB: (2S)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate(Non-covalent)

OLB.3: 9 residues within 4Å: Chain A: Y.139, A.183, R.197, F.201, L.202, G.205, L.206, G.208, V.209 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:F.201, A:L.206 Hydrogen bonds: A:A.183, A:R.197 OLB.4: 17 residues within 4Å: Chain A: D.36, E.64, H.71, C.113, S.117, F.120, H.121, A.138, Y.139, I.142, L.145, I.146, M.236, Y.240, H.267, F.270 Ligands: ZN.2 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:F.120, A:A.138, A:I.142, A:L.145, A:I.146, A:Y.240, A:F.270 Hydrogen bonds: A:D.36, A:E.64

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tanabe, H. et al., Human adiponectin receptor AdipoR1 assumes closed and open structures. Commun Biol (2020)

Release Date

2020-08-19

Peptides

Adiponectin receptor protein 1: A
The heavy chain variable domain (Antibody): B
The light chain variable domain (Antibody): C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
H

C
I

Membrane

We predict this structure to be a membrane protein.
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Adiponectin receptor protein 1

The heavy chain variable domain (Antibody)

The light chain variable domain (Antibody)

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