SMTL ID : 6lht.1

Localized reconstruction of coxsackievirus A16 mature virion in complex with Fab 18A7

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-5-mer

Ligands

5 x SPH: SPHINGOSINE(Non-covalent)

SPH.1: 13 residues within 4Å: Chain C: I.111, D.112, L.113, F.135, F.137, Y.155, V.190, V.192, Y.201, W.203, N.228, M.230, F.233 11 PLIP interactions: 11 interactions with chain C Hydrophobic interactions: C:F.135, C:F.137, C:Y.155, C:Y.155, C:V.190, C:V.192, C:Y.201, C:W.203, C:F.233 Hydrogen bonds: C:D.112, C:L.113 SPH.2: 13 residues within 4Å: Chain D: I.111, D.112, L.113, F.135, F.137, Y.155, V.190, V.192, Y.201, W.203, N.228, M.230, F.233 11 PLIP interactions: 11 interactions with chain D Hydrophobic interactions: D:F.135, D:F.137, D:Y.155, D:Y.155, D:V.190, D:V.192, D:Y.201, D:W.203, D:F.233 Hydrogen bonds: D:D.112, D:L.113 SPH.3: 13 residues within 4Å: Chain E: I.111, D.112, L.113, F.135, F.137, Y.155, V.190, V.192, Y.201, W.203, N.228, M.230, F.233 11 PLIP interactions: 11 interactions with chain E Hydrophobic interactions: E:F.135, E:F.137, E:Y.155, E:Y.155, E:V.190, E:V.192, E:Y.201, E:W.203, E:F.233 Hydrogen bonds: E:D.112, E:L.113 SPH.4: 13 residues within 4Å: Chain F: I.111, D.112, L.113, F.135, F.137, Y.155, V.190, V.192, Y.201, W.203, N.228, M.230, F.233 12 PLIP interactions: 12 interactions with chain F Hydrophobic interactions: F:I.111, F:F.135, F:F.137, F:Y.155, F:Y.155, F:V.190, F:V.192, F:Y.201, F:W.203, F:F.233 Hydrogen bonds: F:I.111, F:L.113 SPH.5: 13 residues within 4Å: Chain G: I.111, D.112, L.113, F.135, F.137, Y.155, V.190, V.192, Y.201, W.203, N.228, M.230, F.233 11 PLIP interactions: 11 interactions with chain G Hydrophobic interactions: G:F.135, G:F.137, G:Y.155, G:Y.155, G:V.190, G:V.192, G:Y.201, G:W.203, G:F.233 Hydrogen bonds: G:D.112, G:L.113

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

He, M. et al., Identification of Antibodies with Non-overlapping Neutralization Sites that Target Coxsackievirus A16. Cell Host Microbe (2020)

Release Date

2020-02-05

Peptides

light chain variable region of Fab 18A7: A
heavy chain variable region of Fab 18A7: B
VP1 protein: CDEFG

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
L

B
H

C
A

D
C

E
D

F
E

G
B

light chain variable region of Fab 18A7

heavy chain variable region of Fab 18A7

VP1 protein

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