SMTL ID : 6lhq.1 (3 other biounits)

The cryo-EM structure of coxsackievirus A16 mature virion in complex with Fab NA9D7

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-1-1-mer

Ligands

1 x SPH: SPHINGOSINE(Non-covalent)

SPH.1: 11 residues within 4Å: Chain A: I.111, D.112, L.113, F.135, Y.155, V.192, Y.201, W.203, N.228, M.230, F.233 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:L.113, A:F.135, A:F.135, A:Y.155, A:Y.155, A:V.192, A:Y.201, A:W.203, A:F.233 Hydrogen bonds: A:D.112, A:D.112, A:L.113

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

He, M. et al., Identification of Antibodies with Non-overlapping Neutralization Sites that Target Coxsackievirus A16. Cell Host Microbe (2020)

Release Date

2020-02-05

Peptides

VP1 protein: A
VP2 protein: B
VP3 protein: C
VP4 protein: D
light chain variable region of Fab NA9D7: E
heavy chain variable region of Fab NA9D7: F

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
L

F
H

VP1 protein

VP2 protein

VP3 protein

VP4 protein

light chain variable region of Fab NA9D7

heavy chain variable region of Fab NA9D7

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