SMTL ID : 6lhp.2 (3 other biounits)

The cryo-EM structure of coxsackievirus A16 mature virion in complex with Fab 14B10

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-5-5-5-5-5-5-mer

Ligands

5 x SPH: SPHINGOSINE(Non-covalent)

SPH.1: 12 residues within 4Å: Chain C: I.111, D.112, L.113, M.114, F.135, Y.155, V.192, Y.201, W.203, N.228, M.230, F.233 10 PLIP interactions: 10 interactions with chain C Hydrophobic interactions: C:I.111, C:F.135, C:Y.155, C:Y.155, C:V.192, C:Y.201, C:F.233 Hydrogen bonds: C:D.112, C:L.113, C:N.228 SPH.2: 12 residues within 4Å: Chain I: I.111, D.112, L.113, M.114, F.135, Y.155, V.192, Y.201, W.203, N.228, M.230, F.233 10 PLIP interactions: 10 interactions with chain I Hydrophobic interactions: I:I.111, I:F.135, I:Y.155, I:Y.155, I:V.192, I:Y.201, I:F.233 Hydrogen bonds: I:D.112, I:L.113, I:N.228 SPH.3: 12 residues within 4Å: Chain O: I.111, D.112, L.113, M.114, F.135, Y.155, V.192, Y.201, W.203, N.228, M.230, F.233 10 PLIP interactions: 10 interactions with chain O Hydrophobic interactions: O:I.111, O:F.135, O:Y.155, O:Y.155, O:V.192, O:Y.201, O:F.233 Hydrogen bonds: O:D.112, O:L.113, O:N.228 SPH.4: 12 residues within 4Å: Chain U: I.111, D.112, L.113, M.114, F.135, Y.155, V.192, Y.201, W.203, N.228, M.230, F.233 10 PLIP interactions: 10 interactions with chain U Hydrophobic interactions: U:I.111, U:F.135, U:Y.155, U:Y.155, U:V.192, U:Y.201, U:F.233 Hydrogen bonds: U:D.112, U:L.113, U:N.228 SPH.5: 12 residues within 4Å: Chain 0: I.111, D.112, L.113, M.114, F.135, Y.155, V.192, Y.201, W.203, N.228, M.230, F.233 10 PLIP interactions: 10 interactions with chain 0 Hydrophobic interactions: 0:I.111, 0:F.135, 0:Y.155, 0:Y.155, 0:V.192, 0:Y.201, 0:F.233 Hydrogen bonds: 0:D.112, 0:L.113, 0:N.228

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

He, M. et al., Identification of Antibodies with Non-overlapping Neutralization Sites that Target Coxsackievirus A16. Cell Host Microbe (2020)

Release Date

2020-02-05

Peptides

light chain variable region of Fab 14B10: AGMSY
heavy chain variable region of Fab 14B10: BHNTZ
VP1 protein: CIOU0
VP2 protein: DJPV1
VP3 protein: EKQW2
VP4 protein: FLRX3

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
L

G
L

M
L

S
L

Y
L

B
H

H
H

N
H

T
H

Z
H

C
A

I
A

O
A

U
A

0
A

D
B

J
B

P
B

V
B

1
B

E
C

K
C

Q
C

W
C

2
C

F
D

L
D

R
D

X
D

3
D

light chain variable region of Fab 14B10

heavy chain variable region of Fab 14B10

VP1 protein

VP2 protein

VP3 protein

VP4 protein

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